Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1310 ATGTACCGAAAACGGTCTAACCAAGGCGATGGCCCTGTTACGAGACCAGTGCGCACAAGTGATAGGATCAAGACAAGGCCAAACATCTATGGCCGACCGTACTTGTATTACAACTCCAAGCGAACCAGGAAAGGCAAGAACAAGACAAGGACAGCTGCTTCACAGATTGCCAAGATGTTGCGCCCAAGAGAAAGACCAGCACAAGATTCAAATGCTAATTCCACATCTACCAATCTTCGTCGTTCAACTAGGAAGAGAAGGATTTCTGTAAATCTTGAAGGTTTCACTGATAGTTCTGGAGCTGAAGATGAAGACTTAATGAGGCCCACATATCAATTGAGGAACCAGATTGACCAAAGTGTGAGTCAGGATGAGTTGATGTCCCACAAGCGCAAAAGAGCCATGGAATCTAAACCAAATCCTCGACGTGAAGGTCTGCGACCTCGTCGTTCGAAGGCTGCTATAAGAGAACCCTTAAATTCAGAATCAGATGATGAGCAAGATCTTTCAGAAGAGAAGGTTGGACAAGATGAAACAGAAAATGGGAATGATGTTGAGGAAAATGATGCAGATGATGGTCAGAATGACATTGAAGGAGATGCTGAGGGTGAAGATGAAGGAGAGGATGAGGATGAAGGAGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTGCAGATGTTCGTAGATTCTCAATGGAGGATGGGAAGGCTCGACCAAGATCACCTCGAAGAGTGTTACATCAAGGTATGGGCACTAAGGTTAGCAGGGATGTTAGGAAGGGTGGATCAAGAGTTCATAAGCGTCACCGTTTAGCAAGACCTGAAGATTCTGATGACTCTCTTCTTGTGGATGAGCTGGATCAAGGCCCTGCTATTCCATGGGGTCGAGGTGGCAGTAGATCTGGCCCACCTTGGCTTTTTGGTGGATTAGATATGCATGGAACAACAGCCTGGGGATTGAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTAGCTACCTTGACATCCGGGATTCAAACTGCCGGACCAAGCTCTAAGGGAGGTGCAGATATTCAACCTTTACAGGTTGATGACAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTTTAAAGGAAATGGTTTTCTTTCCATTACTGTATCCAGATTTCTTTGCAAGTTATCACATTACTCCTCCTAGAGGGGTGTTGTTATGTGGGCCCCCTGGCACAGGAAAAACATTAATTGCAAGAGCTTTAGCTTGTGCTGCTTCAAAAGCTGGTCAGAAGGTTAGCTTTTACATGCGTAAAGGAGCGGATGTGCTAAGTAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAATTACTCTTTGAGGAAGCACAGAGGAATCAGCCTTCTATTATTTTCTTTGACGAGATAGATGGACTTGCTCCTGTGAGGTCTAGCAAACAAGAACAGATTCACAATTCTATTGTTTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATAGGAGCAACCAACAGGATTGATGCAATTGATGGAGCCTTGCGGCGCCCTGGTAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGTAAGTGGAAGAATCCTCCTTCAAAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGATATTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCTGCCATCCGTGCTTTCCGTGAAAAGTATCCACAGGTTTACACAAGTGATGACAAATTTTTAATAGATGTGGATTCGGTTTGGGTTGAAAAGTATCATTTTATTGAAGCAATGTCGACAATAACTCCTGCTGCTCATAGGGGAGCAATTGTGCACTCTAGGCCATTGTCTCTAGTTGTTCAGCCATGTCTACAAAGACATCTAGAGGAAGCCATGAATATTATATCTGATATTTTTCCTCCAGCAGCTGTTGCTTCAGAATTGACCAAATTTTCTATGCTTTCCTATGGTTCTGCTATTCCACTTGTCTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACTGGGCTGGACCATCTTGGGCCTGCAATTTTACATGAACTGGAAAAATTTCCTGTTCATTCATTAGGACTTCCATCTCTCCTCTCAGATCCTAGTGCTAAGACACCAGAGGAGGCTTTAGTGCATATATTTGGTGAAGCTAGAAGAACAACACCATCTATTCTCTATTTACCGCAGTTTGATATTTGGTGGGAAACTGCACATGAGCAGCTTAGGGCTGTTCTCCTGACCTTGCTAGAAGAATTGCCTTCTGACTTCCCTATATTATTACTTGGAACATCCTCAGTCCCACTTGATGATGTTGATGAAGTGGCTCCTTCATTGTTTCCTCGGCGTTCAGTCTATAACATGAGCATACCATCTGTTGAAGATAGAACATCATTTTTCAATTGTTTGATAGAGGCCGCTTTGTCCGTCTCGTTGGAGGGAATGAGCAAAAAATCCAAGGGTACACGTTCCCTTCCTGAACTTCCCAAGGCACCAAAATTAGCTAGTGGTCCCAAGGCATCTGAGCTCAAAGCAACTGTTGAAGCTGAGCAGCATGCCCTTCGCAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATATTATATGACAAACGATTTACTGCCTTCCATTATCCAGTCTCAGATGAAGATGCACCTAACTATCGTTCGGTTATCCAGAACCCGATGGATATGGCTACCATGCTGCAGCATGTTGATAATGGCCACTATATTACATGTTCAGCATTCTTACAGGACATCGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGAGGACTACAATGGGTCAAGGATTGTCAGTAGAGCTTGTGAACTCCGAGACGCAGTGCATGGAATGCTCTCACAGATGGATCCCGCACTGGTTGCATACTGTGACAAGATTGCAGCCCAAGGTGGCCCAGTTCATTTGCCTGATGATTTCACAGGGTCTACATTCCCATCTACTCCTGTTGTACAGTTGGGAACCACGACTAGAATGAGTGCTCGACTACGTAATGTCCAACCTGAGGTTAATATGGATCAAAGTTATGAAGCATTAAAGCGGACAAAAAGGAGCATGGATGTTACGCATTCAGCCGAAGACAAGTCACGGCAAGATCCTTTACCGTCTAAGTCTTCCCAGGAGAATCAGGCCAATGACTTGGATTGTGAAAGGCTGGAATCTGCTTCAGTTGATGGAAGTCTGAATGGAGCTTGTACAAGTGGACATGGTGATGATAGCAGCCCAGAAGATGTCATAATGTTAGATGGTGAGTTTTCAAGCCAAGTGGAGTCTGTCAAGCAGCTTTTTGTTAAGCGTAGTGAAAATTACGGCATTCCACAGCTAGAAAGGCTTTACACGAGAATAATGAAGGGCGTTTTTGAAACCAAGGGTAAAGGAACAAAAAATCTGAAGACTTCGGTGTTGAAGTTTTTGTTGAACTTCGTAGAGGATGATGCAAATTTCTGA 3603 0.4407 MYRKRSNQGDGPVTRPVRTSDRIKTRPNIYGRPYLYYNSKRTRKGKNKTRTAASQIAKMLRPRERPAQDSNANSTSTNLRRSTRKRRISVNLEGFTDSSGAEDEDLMRPTYQLRNQIDQSVSQDELMSHKRKRAMESKPNPRREGLRPRRSKAAIREPLNSESDDEQDLSEEKVGQDETENGNDVEENDADDGQNDIEGDAEGEDEGEDEDEGDEDGDDEEGEEEQDGRRRYDLRNRADVRRFSMEDGKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTTAWGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKNPPSKELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVWVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEEAMNIISDIFPPAAVASELTKFSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDIWWETAHEQLRAVLLTLLEELPSDFPILLLGTSSVPLDDVDEVAPSLFPRRSVYNMSIPSVEDRTSFFNCLIEAALSVSLEGMSKKSKGTRSLPELPKAPKLASGPKASELKATVEAEQHALRRLRMCLRDVCNRILYDKRFTAFHYPVSDEDAPNYRSVIQNPMDMATMLQHVDNGHYITCSAFLQDIDLIVSNAKAYNGEDYNGSRIVSRACELRDAVHGMLSQMDPALVAYCDKIAAQGGPVHLPDDFTGSTFPSTPVVQLGTTTRMSARLRNVQPEVNMDQSYEALKRTKRSMDVTHSAEDKSRQDPLPSKSSQENQANDLDCERLESASVDGSLNGACTSGHGDDSSPEDVIMLDGEFSSQVESVKQLFVKRSENYGIPQLERLYTRIMKGVFETKGKGTKNLKTSVLKFLLNFVEDDANF 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1310 1200 ProSiteProfiles Bromodomain profile. 919 981 IPR001487 GO:0005515
Dere08g1310 1200 MobiDBLite consensus disorder prediction 861 884 - -
Dere08g1310 1200 MobiDBLite consensus disorder prediction 224 254 - -
Dere08g1310 1200 ProSitePatterns Bromodomain signature. 916 973 IPR018359 -
Dere08g1310 1200 ProSitePatterns AAA-protein family signature. 521 539 IPR003960 GO:0005524|GO:0016887
Dere08g1310 1200 SMART bromo_6 896 1003 IPR001487 GO:0005515
Dere08g1310 1200 SUPERFAMILY Bromodomain 894 1008 IPR036427 GO:0005515
Dere08g1310 1200 Gene3D - 552 637 - -
Dere08g1310 1200 Pfam ATPase family associated with various cellular activities (AAA) 416 551 IPR003959 GO:0005524|GO:0016887
Dere08g1310 1200 PANTHER AAA DOMAIN-CONTAINING 42 1013 IPR045199 -
Dere08g1310 1200 FunFam ATPase family AAA domain-containing protein 2B 552 637 - -
Dere08g1310 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 915 IPR027417 -
Dere08g1310 1200 Gene3D - 374 644 IPR027417 -
Dere08g1310 1200 FunFam ATPase family AAA domain-containing protein 888 1016 - -
Dere08g1310 1200 Gene3D - 888 1016 IPR036427 GO:0005515
Dere08g1310 1200 PRINTS Bromodomain signature 962 981 IPR001487 GO:0005515
Dere08g1310 1200 PRINTS Bromodomain signature 928 944 IPR001487 GO:0005515
Dere08g1310 1200 PRINTS Bromodomain signature 944 962 IPR001487 GO:0005515
Dere08g1310 1200 MobiDBLite consensus disorder prediction 1067 1086 - -
Dere08g1310 1200 Gene3D - 681 847 IPR027417 -
Dere08g1310 1200 MobiDBLite consensus disorder prediction 114 291 - -
Dere08g1310 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 640 IPR027417 -
Dere08g1310 1200 CDD Bromo_AAA 896 1006 - -
Dere08g1310 1200 MobiDBLite consensus disorder prediction 1067 1097 - -
Dere08g1310 1200 MobiDBLite consensus disorder prediction 1 85 - -
Dere08g1310 1200 FunFam ATPase family, AAA domain-containing 2 374 557 - -
Dere08g1310 1200 Pfam Bromodomain 910 977 IPR001487 GO:0005515
Dere08g1310 1200 SMART AAA_5 412 553 IPR003593 GO:0016887
Dere08g1310 1200 Pfam AAA+ lid domain 578 615 IPR041569 -
Dere08g1310 1200 MobiDBLite consensus disorder prediction 124 163 - -
Dere08g1310 1200 MobiDBLite consensus disorder prediction 181 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1310 Dere-ChrDere08 17241560 17251355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1310 362 616 Calmodulin-binding Proteins AT3G56690 36.293 1.07e-40 161