Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1293 ATGTTGTCGACCAACGCAGCCACCACTATGTCCGGCGGCGATTCCCTTGACCATCTTGACACTCCAACACTAGACAGGGAGTCTCCAAGGCTCCTCCAATCTATTTCCGAGCACGGAGGCTATGCTTATGTCAGGATGGCGGTTCTGGCGGCCGCCGATGACTTTCGCGCTGCCGAAGCTGCTCGTGAGATGGCTTGGGAGCAGCTACACTCGGGGCCCTGGCACTCCGTCCTCCCAGTGTGGCGTGATGCATACTCTATGGCGTGCCTCCACGTGGCCCAGTGCCATTATAGCATTGGCGAGTTCAAGGAGGCCCTTCGGGCTTTGGATATGGGTCTGATCATGGGAGGGATGCTTCTAAGGAAAGACTTGGACTCTGCTGTTGAGAAAGTTTCGGAGAAGGCCGGCAACATTAGGGTTTCTAAAGATTGCTTTGGAGGTTTGGGGAAGGACGAGCATCCACTTGTTCATGAGCAACTTAATGACACTGAGGTGCTCCAACTTTTACCTGTCAAGTCCTTTTCATGTAAGACTGTGATGAAGAGGCCTGTTCTGTCATTGGAAAGATTTCTAAAGGACTATTTCCTGCCCGGTTCCCCAGTAATTATCAGTGACTGTATGGATCACTGGCCAGCCCTGTCAAAATGGAACAACATAGATTATTTGAGAAGAGTTGCAGGTGACCGCACAGTTCCAGTTGAGGTTGGGAAGAACTATTTATGTGCAGAGTGGAAGCAAGAACTAATTACATTTTCAGAATTTCTTCAGCGGATTGAGTCCCGTGGCTGCTCTTCTTCTGGTTCTGGGAGTCCTACGTATCTTGCTCAGCATCCATTATTTGATCAGATAACCAAGCTTCGGAAAGATATTTGTATACCAGATTATTGTTTTACCGGTGGAGGCGAACTAAGATCTATCAATGCTTGGTTTGGTCCAGCTGGGACAGTCACACCATTACACCATGATCCACACCATAACATTCTAGCTCAGGTTGTTGGAAAGAAATATATAAGGCTTTACTCTGCATCTTTGTCTGAGGAACTTTATCCTTCTACTGAAACCATGCTTTGCAATTCTAGCCAGGTTGATTTAGATGATATAGATGAAATTAAGTTTCCCAAGATGCAAGACTTGGAATTTGTTGACTGTATTCTAGAAGAAGGCGAAATGCTATATATCCCGCCAAAATGGTGGCACTATGTTCGCTCACTAACTACAAGTTTATCGGTAAGCTTTTGGTGGAGCGAGGGTGAAAGTTCATGA 1263 0.4679 MLSTNAATTMSGGDSLDHLDTPTLDRESPRLLQSISEHGGYAYVRMAVLAAADDFRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAQCHYSIGEFKEALRALDMGLIMGGMLLRKDLDSAVEKVSEKAGNIRVSKDCFGGLGKDEHPLVHEQLNDTEVLQLLPVKSFSCKTVMKRPVLSLERFLKDYFLPGSPVIISDCMDHWPALSKWNNIDYLRRVAGDRTVPVEVGKNYLCAEWKQELITFSEFLQRIESRGCSSSGSGSPTYLAQHPLFDQITKLRKDICIPDYCFTGGGELRSINAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASLSEELYPSTETMLCNSSQVDLDDIDEIKFPKMQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1293 420 FunFam lysine-specific demethylase JMJ30 178 414 - -
Dere08g1293 420 Gene3D Cupin 178 415 - -
Dere08g1293 420 ProSiteProfiles JmjC domain profile. 266 420 IPR003347 -
Dere08g1293 420 MobiDBLite consensus disorder prediction 1 16 - -
Dere08g1293 420 SUPERFAMILY Clavaminate synthase-like 185 415 - -
Dere08g1293 420 MobiDBLite consensus disorder prediction 1 23 - -
Dere08g1293 420 Pfam Cupin-like domain 189 416 IPR041667 -
Dere08g1293 420 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 83 416 - -
Dere08g1293 420 SMART cupin_9 272 420 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1293 Dere-ChrDere08 16974764 16978402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1293 189 414 Acyl Lipid Metabolism Gene Families AT3G45880 24.453 9.74e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere08g1293 Cupin_8 5.4e-50 CL0029