Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1288 ATGGAGTCAGATCTCCAACAGCGCCCTCCCATGTTTAACGATCAGCAGCAGATAAATTCGGGGCTGACACGTTACCGATCGGCACCGAGTTCGTATTTCACGAACATAATTGACAAGGAGTTTTTTGAGCACATATTCAATCGCCCTTCTAGCCCCGAGACAGAGCGAGTTTTTTCACGCCTCATCAATAGCTTTGGTGAAGACTCACCTCCTCAAACTCTCCCTCCTGTTACTGTGAAGCAAGAGATCAACCAGAACCAGCAAGCTCAGTCTCAGGCTCAGGCTATCCCATCCATCGATAATGAACCCGTGGTTCTACAGCAACAGCAGCAGAACAATATGAATATGTATGTGTGTGCTCCTCCTCGTAGCGCAGCGCGACCACCTTTGCCGAATCAGAGCCTCTCCTCGGCTAATCGGTTGCCTCCTATGAAGACTGGAATTGGAACTAGTTCAAATCTTGTTAGGCATAGTAGCTCCCCTCCTGGACTCTTTGCTAACATCAACATTGATACTGGCTATGCTGCGGCTATGGGAGGCATTGGAACTTTTGGAGGTGGTAATAACGCAAGCGAAGTGGCAAACTTTCCTGCTGCAACGAGGTTGAAGAACCCACCAGCCTACTCGTCGGGGCTAATGTCATCAATAGCTGAAATTGGAGATAAAAACAACATTAAATTGGATGATCCACAGAGTGAAGCTTTTGGTGAAAGCCAGGATGATGATTTTATGAAAAGTTTCCCTGTAGATCCTTGGGACGACCCTGCAATCATGCCTGACAATATTAGCGGTCTGAAGAGATACAGAGATGATGATGATGATGCAAAGCCATTTTCTGGTTTAAATGCAGCTGAAACTAAGAGTGAGAGGGGAGGCCAGGGCGGTGGTCTTCCTCCTTTGGCTCATCACTTGAGTTTGCCAAAAACTGCAACGGAGATGGCAGCCATTGAGAAGTTGTTGCAGTACTCAGATTCTGTTCCCTGTAAGATTCGGGCCAAGCGAGGCTGTGCTACTCATCCAAGAAGCATTGCAGAGCGGGTCAGAAGAACTAAGATTAGTGAGCGCATGAGGAAAATACAAGATCTGGTTCCCAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTCGACTACATCAAAGACCTTCAAAAGCAGGTTCAGACACTTTTAGACAGCCAAGCTAAATGGAGAAGAAGTGAAGTGGGATGGGACGGGAATGAGAGGGAAAGAAAAGGACGAGGTGGGTTTTGGAAGCAGAGGGGAAGTGAGTGGGCCCAGCCCAAATCCATAAAGCTGATGAAGACGTCAGAGATGATGTCAGAGAGCAAAAAGAGAAAAAGCGGGCGAGGAGAACGTGATGGGAGATTACTTGTGGATGGTAGATTACCTACCTAG 1407 0.4741 MESDLQQRPPMFNDQQQINSGLTRYRSAPSSYFTNIIDKEFFEHIFNRPSSPETERVFSRLINSFGEDSPPQTLPPVTVKQEINQNQQAQSQAQAIPSIDNEPVVLQQQQQNNMNMYVCAPPRSAARPPLPNQSLSSANRLPPMKTGIGTSSNLVRHSSSPPGLFANINIDTGYAAAMGGIGTFGGGNNASEVANFPAATRLKNPPAYSSGLMSSIAEIGDKNNIKLDDPQSEAFGESQDDDFMKSFPVDPWDDPAIMPDNISGLKRYRDDDDDAKPFSGLNAAETKSERGGQGGGLPPLAHHLSLPKTATEMAAIEKLLQYSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKIQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLLDSQAKWRRSEVGWDGNERERKGRGGFWKQRGSEWAQPKSIKLMKTSEMMSESKKRKSGRGERDGRLLVDGRLPT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1288 468 MobiDBLite consensus disorder prediction 441 462 - -
Dere08g1288 468 SMART finulus 342 392 IPR011598 GO:0046983
Dere08g1288 468 FunFam Transcription factor bHLH130 family 337 404 - -
Dere08g1288 468 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 401 - -
Dere08g1288 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 386 IPR011598 GO:0046983
Dere08g1288 468 MobiDBLite consensus disorder prediction 264 278 - -
Dere08g1288 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 400 IPR036638 GO:0046983
Dere08g1288 468 MobiDBLite consensus disorder prediction 409 468 - -
Dere08g1288 468 Gene3D - 337 405 IPR036638 GO:0046983
Dere08g1288 468 Pfam Helix-loop-helix DNA-binding domain 341 387 IPR011598 GO:0046983
Dere08g1288 468 MobiDBLite consensus disorder prediction 260 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1288 Dere-ChrDere08 16924603 16928107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1288 1 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.049 4.67e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g1288 HLH 6.4e-09 No_clan