Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1284 ATGGACTCAGCAACTCCACCGTCGCCGGAGCTCAACCTCGACAACCTCAAAGCACTCAAAGTCCTTGGCAAGGGTGCCATGGGCACCGTCTTCCTCGTCAACGACACCGTATCCGACCCCTCTGCCCGCTGCCCCTTCGCCGTCAAGGTCGTCGAGAAATCCTCCATCCACGCCAAGCTCGACGCCGACCGCCGTGCCCGCTGGGAAATCCAGGTCCTCTCTCGCTTGTCTCACCCATTTCTCCCTTCCCTTCTAGGCACATTTGAGTCCCATCAACTCTTGGGCTGGGCCGTCCCTTACTGTCCCGGTGGCGACCTCAACGTCCTACGATACCGTCAAACCGATCGCGTCTTCTCCCCTGCCGTCATTCGCTTCTATTTGGCCGAGATCGTCTGCGCTCTAGAGCATCTCCATACGCTGGGCATCGCCTATCGCGATTTGAAGCCAGAGAATGTCCTCGTTCAGCAGTCCGGTCACGTGACCCTCACAGACTTCGATCTCTCTCGTAAGCTCATCCCCAAATCCATCAAAACCGTCATGGCCGTCGAAGACAATCAGCCGGAAAATCGACGTAAGCATCGCCGGAATTTCACGCGCTGGATCCCAGTCTCGCCGGACATTATTTACAACAAGAAAGGATTAAATAAGGCAAAGTCCGCCCGAGTCAGCCCGGTTAGTAGACGGAAACCGAGTTTCTCAAATGGTGAGAGATCAAACTCCTTCGTCGGCACGGAAGAATACGTTTCGCCCGAGGTTGTCCGCGGCGAAGGGCATGAGTTCGCCGTTGACTGGTGGGCCCTAGGAATACTGTCATACGAGATGTTATATGGCACGACTCCCTTTAAGGGACGGAATCGGAAAGAAACGTTCCGTAACGTTCTGATGAAGGCTCCAGAATTCGTAGGGAAGCGGACGGCGTTAACAGACTTAATCGAAAGGTTGTTGCAAAAGGACCCCACGAGGCGATTGGGCTTCGTGCGTGGGGCGAGCGAGATCAAGGAGCATGAGTTCTTCAGAGGGGTCCGGTGGGACCTATTGACGCAGGTTGTACGGCCGCCGTTTATTCCGTCAAGAGAGGACGGGGACTTGACGGAGCGATTGAGTGCCGGCGGGGTAGACATAAGGGAATACTTCCAGAGACTAAAATTGCCGCTGTCGCTCCCGCCTTCACCGTTACCGTCGCCGTCGCCGGAGAAACAGAGGGATATTTCTTTCACAGAATTCTGA 1227 0.5542 MDSATPPSPELNLDNLKALKVLGKGAMGTVFLVNDTVSDPSARCPFAVKVVEKSSIHAKLDADRRARWEIQVLSRLSHPFLPSLLGTFESHQLLGWAVPYCPGGDLNVLRYRQTDRVFSPAVIRFYLAEIVCALEHLHTLGIAYRDLKPENVLVQQSGHVTLTDFDLSRKLIPKSIKTVMAVEDNQPENRRKHRRNFTRWIPVSPDIIYNKKGLNKAKSARVSPVSRRKPSFSNGERSNSFVGTEEYVSPEVVRGEGHEFAVDWWALGILSYEMLYGTTPFKGRNRKETFRNVLMKAPEFVGKRTALTDLIERLLQKDPTRRLGFVRGASEIKEHEFFRGVRWDLLTQVVRPPFIPSREDGDLTERLSAGGVDIREYFQRLKLPLSLPPSPLPSPSPEKQRDISFTEF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1284 408 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Dere08g1284 408 Gene3D Transferase(Phosphotransferase) domain 1 235 357 - -
Dere08g1284 408 ProSiteProfiles Protein kinase domain profile. 16 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1284 408 FunFam Serine/threonine-protein kinase UCNL 16 104 - -
Dere08g1284 408 SMART serkin_6 16 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1284 408 Pfam Protein kinase domain 18 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1284 408 Pfam Protein kinase domain 233 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1284 408 FunFam Serine/threonine-protein kinase OXI1 236 357 - -
Dere08g1284 408 Gene3D Transferase(Phosphotransferase) domain 1 105 175 - -
Dere08g1284 408 MobiDBLite consensus disorder prediction 388 408 - -
Dere08g1284 408 Gene3D Phosphorylase Kinase; domain 1 16 104 - -
Dere08g1284 408 PANTHER FLIPPASE KINASE 1-RELATED 10 358 - -
Dere08g1284 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Dere08g1284 408 SUPERFAMILY Protein kinase-like (PK-like) 13 375 IPR011009 -
Dere08g1284 408 FunFam Serine/threonine-protein kinase OXI1 105 173 - -
Dere08g1284 408 ProSiteProfiles AGC-kinase C-terminal domain profile. 339 408 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1284 Dere-ChrDere08 16872153 16873379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1284 11 408 AGC Kinase Gene Family AT3G20830 64.604 6.87e-176 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Dere08g1284 Pkinase 2e-31 CL0016