Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1278 ATGACCGATCCCTACTACTGCAATGACCTCAATTCTTCCCTTCTTTTATCTTCTTCCTCGTCTTGTTCCATTAATAATCCGCCCTTCTATTTTCCTTCTACTTACCATAACTGTACATCTTTTAATTTACCCTCCTCTCCCCCTCTGAGAGAAGCCCTTCCTCTCCTTAAACTAAGTCCTACGAGACATGAAGATGTGCAAGTAGATAACAAGGAGAAAGAAGGAAGCATGTGGTCTAGTTCTTTGGATGATGATGATACTGTGACGGTGGCTTTACAATTGCACCTAGGGCTTCCAACAACTAGCAGTACAACTTCACCTGATTTAGCTATTTCAAACCTGGACTCCGCAGAGGTTTCAGTTTCAGACAAAGAAGAAGTCTCAACTGTCGCTTCTGGATATCTCTCAGATAGGGTTAATAGAGGAGGTCAGTATTGGATCCCTACTCCTGCTCAGATTCTGATTGGTCCAACGCAGTACTCCTGCCCTCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATACAGAAAGGGGCCAGAGTCTCTGAGGGGAACACAGCCAACAGCAATGCTTAGGCTTCCATGCTATTGTTGTGCACCAGGATGCAAGAACAACATTGAGCATCCCAGAGCCAAACCACTGAAAGACTTCAGAACCCTCCAAACCCATTACAAGAGAAAGCATGGAATGAAGCCCTTCATGTGTAGAAAATGTTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTCTGGTATTGCTCCTGTGGTTCTGACTTCAAGCATAAAAGATCCCTTAAAGATCATATCAAGGCTTTCGGACATGCCCATACGCCTTGTGGTATTGATTGCCTAGATCAAGATGAAGTAGCTTCTGAAATTGACCTGCAAAACGAATCCTTCCACACTCATAGTTAG 972 0.4403 MTDPYYCNDLNSSLLLSSSSSCSINNPPFYFPSTYHNCTSFNLPSSPPLREALPLLKLSPTRHEDVQVDNKEKEGSMWSSSLDDDDTVTVALQLHLGLPTTSSTTSPDLAISNLDSAEVSVSDKEEVSTVASGYLSDRVNRGGQYWIPTPAQILIGPTQYSCPLCFKTFNRYNNMQMHMWGHGSEYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIEHPRAKPLKDFRTLQTHYKRKHGMKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHAHTPCGIDCLDQDEVASEIDLQNESFHTHS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1278 323 SUPERFAMILY beta-beta-alpha zinc fingers 226 264 IPR036236 -
Dere08g1278 323 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Dere08g1278 323 PANTHER ZINC FINGER PROTEIN WIP2 30 313 IPR043584 GO:0003700|GO:0010468
Dere08g1278 323 FunFam Zinc finger protein WIP2 213 295 - -
Dere08g1278 323 SUPERFAMILY beta-beta-alpha zinc fingers 156 183 IPR036236 -
Dere08g1278 323 Gene3D Classic Zinc Finger 159 182 - -
Dere08g1278 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1278 Dere-ChrDere08 16822762 16824815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1278 36 313 C2H2 Transcription Factor Family AT1G51220 63.605 6.68e-130 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g1278 None None None