Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1276 ATGCAATGTATACTGCTAAGTCAGGGGTATAAGAGGCACTCAATCAAAATTTGGTGGGAACCTCCTCTTCCAAATATTGCGAAATCCTTTCGAAATTTTCAATTGAAAGCCCCAAAACCATCAGCACCTCGCGATCTCCAATTACGGTACTTGGATCAAGCCATAGATGGCTCAGCCTTTCACAAATCAATGGAGTCTTGGTCTCATAATGCAGTATCGGCAGCTAACAGGATGCATGATCTTAAGATTCCTTTATTGGACACTCCACAAGATGCCACAGTCAGGAAAGTCATGTTTAAAATAAAAGATATCAGTTGTGCCTCCTGTGTAAATTCGATAGAATCTGTAGTTGGAAATCTTAGTGGGGTTAATTGCATTATGGTGTCAGCTCTTGATGGCAAAGCTACAATCGAATATGTGCCAAAGCTCATTAGTGCCAACAAAATAAAAGAAACTATAGAAGAAGCAGGTTTTAAAGTTCATGAGCTTTCAGAGCAAGACATATCAGTATGTTGGGTCAGGATTAAAGGAATGGCATGCACAAGCTGCTCCGAGTCTGTTGAGCGTGCCCTTCAAATGATTGATGGAGTGAAAAAGGCAGTAGTTGGCCTAGCTTTGGAAGAAGCAAAAGTGTATTTTGATCCTATTCTCACTGACATTAACAAAATAATTGAAGCAGTAGAAGATGCTGGCTTTGGGGCAGATCTCATTAGCTCTGGGACTGATGTGAACAAAGTGCATCTAAGAATTGAAGGAGTTGATTCTACAGACGATGTAAATGTTTTAATGTCATCTCTTGAGTTAGCTGAAGGTGTGAATCATGTTGAAATGGACTTGACAGAACATAAAGTTACAGTTACCTATGATCCTGATGTTACAGGTCCAAGATCTCTTATACAGTGTATCCAAGCAACTGGCCATGGCCCAAATGAGTATCGTGCAACCTTGTGCACTCCTTCAAGACAAAGAGAAACAGGGAACATGTATGAAATTCATACATATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCTGTTCCTGTGTTCTTATTTGCCATGGTACTTCCCATGCTTCCTCCGTATGGCAACTGGTTGAACTATAAGATCCACAATATGCTAACTCTTGGAATGTTTCTAAGATGGATCCTTAGCACACCTGTTCAGTTTATAGTTGGCAAAAGGTTCTATGTTGGATCATATCATGCACTGAGGCGAAGATCTGCTAACATGGATGTGCTGGTTGCACTAGGCACTAATGCTGCATATTTTTACTCTATTTATATTTTAATAAAAGCACTCACTTCAGTCACATTTCAAGGACAAGATTTCTTTGAGACCAGTTCCATGTTGATATCCTTTATCCTCTTAGGAAAATATTTGGAGGTTGTGGCTAAAGGGAAAACATCAGATGCTTTAGCAAAGCTGACACAACTTGTTCCTGATAAATCTTATTTATCAGCCCTTGATGCTGATGGAAATGTCATCTCTGAGACAGAAATTGACACTCAACTTATACAAAGGAACGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCTGTCGATGGTATTGTTATAAAAGGGCAAAGCTATGTAAATGAAAGTATGATCACAGGGGAGGCAAGTCCTATTGATAAAAATCCAGGAGACAAGGTTATTGGTGGGACCATGAATGAGAATGGCTGCTTACTGGTTAAGGCCACACATGTTGGATCAGAGACTGCACTTTCTCAAATTGTTCAGCTTGTAGAAGCCGCTCAACTTGCCAGAGCACCAGCTCAAAAACTTGCTGACCATATTTCAAAATTTTTTGTTCCAATAGTGGTTGTTGCAGCACTTATAACCTGGCTGGGATGGTTTATTCCTGGCGAAACCGGTGTTTACCCTAAATATTGGATACCAAAAGCTATGGATGCATTTGAGCTTGCTTTGCAATTTGCTATTTCAGTGCTAGTTGTTGCCTGCCCATGTGCTCTGGGTCTAGCAACACCAACGGCAGTCATGGTTGCTTCAGGAATGGGTGCTTCTCAAGGTGTGCTCATCAAGGGAGGAGATGCACTGGAAAAGGCTCACAAGGTAAAAATTGTTGTGTTCGATAAGACAGGGACACTTACAGTTGGAAAGCCAGAGGTAGTTAGTGCAGTGCTGTTTTCTGAAGTTTCGATGGAGGGGTTATGTGACATGGCCATTGCTGTAGAGGCAAGCAGTGAACACCCAATAGCGAAAGCTGTTGTGAATCATGCAAAGAGGCTGCGCCAGAAGTTTGGGTCTTGCAATGAGCAAGTTTTAGATGTCAAGGACTTTGAGGTGCACGTTGGAGCTGGGGTAAGTGGAAAAGTTGCTGGGAGAACAGTTTTAGTTGGGAACAAAAGACTCATGCATTCTTGTAACGTCCCAATATGTCCAGAGGTTGAGAGGTACATTTCTGAAAATGAAGTTCTGGCTAGAACTTGTGTATTAGTTTCCATTGACGGAAAGATTGCTGGAGCTTTCTCTGTAACTGATCCTGTAAAGCCAGAGGCTAAGCGTGTAATATCTTTTCTCCACTCCATGGGCATCTCAAGCATCATGGTGACTGGTGATAACTGCGCTACTGCAACTGCTATTGCAAATGAAGTTGGTATTGACAAGGTCTTCGCTGAGACAGATCCACTGGGAAAAGCAGACAAGGTTAAAGACTTGCAGATGAATGGGATGGTCGTGGCAATGGTGGGCGATGGAATCAATGACTCACCAGCTTTAGTTGCTGCTGATGTTGGTATGGCAATTGGTGCTGGAACTGACGTTGCCATAGAAGCAGCTGATATAGTTCTGGTCAAAAGTAGCTTGGAAGATGTAATTACAGCCATAGATCTATCTAGAAAGACCATGTCTCGTATCCGTCTCAACTATATCTGGGCTCTTGGTTACAACATTCTTGGGATGCCAATTGCTGCTGGCATCTTGTACCCTTTCACTGGAATCAGGTTGCCCCCCTGGCTTGCTGGTGCTTGCATGGCTGCTTCATCTCTTAGTGTAGTTTCTTCATCCCTCTTGTTGCAGCTCTACAAGAAACCTTTGCACGTGGGATCCACTTGA 3078 0.4224 MQCILLSQGYKRHSIKIWWEPPLPNIAKSFRNFQLKAPKPSAPRDLQLRYLDQAIDGSAFHKSMESWSHNAVSAANRMHDLKIPLLDTPQDATVRKVMFKIKDISCASCVNSIESVVGNLSGVNCIMVSALDGKATIEYVPKLISANKIKETIEEAGFKVHELSEQDISVCWVRIKGMACTSCSESVERALQMIDGVKKAVVGLALEEAKVYFDPILTDINKIIEAVEDAGFGADLISSGTDVNKVHLRIEGVDSTDDVNVLMSSLELAEGVNHVEMDLTEHKVTVTYDPDVTGPRSLIQCIQATGHGPNEYRATLCTPSRQRETGNMYEIHTYRDQFLFSCLFSVPVFLFAMVLPMLPPYGNWLNYKIHNMLTLGMFLRWILSTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSIYILIKALTSVTFQGQDFFETSSMLISFILLGKYLEVVAKGKTSDALAKLTQLVPDKSYLSALDADGNVISETEIDTQLIQRNDIIKIVPGAKIPVDGIVIKGQSYVNESMITGEASPIDKNPGDKVIGGTMNENGCLLVKATHVGSETALSQIVQLVEAAQLARAPAQKLADHISKFFVPIVVVAALITWLGWFIPGETGVYPKYWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKIVVFDKTGTLTVGKPEVVSAVLFSEVSMEGLCDMAIAVEASSEHPIAKAVVNHAKRLRQKFGSCNEQVLDVKDFEVHVGAGVSGKVAGRTVLVGNKRLMHSCNVPICPEVERYISENEVLARTCVLVSIDGKIAGAFSVTDPVKPEAKRVISFLHSMGISSIMVTGDNCATATAIANEVGIDKVFAETDPLGKADKVKDLQMNGMVVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQLYKKPLHVGST 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1276 1025 SUPERFAMILY HMA, heavy metal-associated domain 92 166 IPR036163 GO:0046872
Dere08g1276 1025 FunFam ATPase copper transporting beta 92 166 - -
Dere08g1276 1025 ProSitePatterns E1-E2 ATPases phosphorylation site. 699 705 IPR018303 -
Dere08g1276 1025 Pfam haloacid dehalogenase-like hydrolase 693 918 - -
Dere08g1276 1025 CDD P-type_ATPase_Cu-like 338 1000 - -
Dere08g1276 1025 Gene3D - 243 318 - -
Dere08g1276 1025 Gene3D - 171 240 - -
Dere08g1276 1025 Pfam Heavy-metal-associated domain 173 232 IPR006121 GO:0046872
Dere08g1276 1025 Pfam Heavy-metal-associated domain 99 159 IPR006121 GO:0046872
Dere08g1276 1025 Pfam Heavy-metal-associated domain 249 307 IPR006121 GO:0046872
Dere08g1276 1025 SUPERFAMILY Calcium ATPase, transmembrane domain M 442 691 IPR023298 -
Dere08g1276 1025 CDD HMA 248 306 IPR006121 GO:0046872
Dere08g1276 1025 FunFam Copper-transporting ATPase 1, putative 465 587 - -
Dere08g1276 1025 Pfam E1-E2 ATPase 496 675 - -
Dere08g1276 1025 PRINTS H+-transporting ATPase (proton pump) signature 935 960 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1276 1025 PRINTS H+-transporting ATPase (proton pump) signature 904 920 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1276 1025 FunFam Copper-transporting ATPase HMA5 168 239 - -
Dere08g1276 1025 ProSiteProfiles Heavy-metal-associated domain profile. 244 310 IPR006121 GO:0046872
Dere08g1276 1025 ProSiteProfiles Heavy-metal-associated domain profile. 169 235 IPR006121 GO:0046872
Dere08g1276 1025 PRINTS P-type cation-transporting ATPase superfamily signature 829 840 - -
Dere08g1276 1025 PRINTS P-type cation-transporting ATPase superfamily signature 533 547 - -
Dere08g1276 1025 PRINTS P-type cation-transporting ATPase superfamily signature 904 923 - -
Dere08g1276 1025 PRINTS P-type cation-transporting ATPase superfamily signature 927 939 - -
Dere08g1276 1025 PRINTS P-type cation-transporting ATPase superfamily signature 697 711 - -
Dere08g1276 1025 PRINTS P-type cation-transporting ATPase superfamily signature 851 861 - -
Dere08g1276 1025 SFLD p-type atpase 679 956 IPR044492 -
Dere08g1276 1025 NCBIfam heavy metal translocating P-type ATPase 410 1013 IPR027256 GO:0006812|GO:0016020|GO:0019829
Dere08g1276 1025 ProSitePatterns Heavy-metal-associated domain. 175 204 IPR017969 GO:0046872
Dere08g1276 1025 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 87 1020 - -
Dere08g1276 1025 NCBIfam HAD-IC family P-type ATPase 450 981 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1276 1025 Gene3D - 708 837 IPR023299 GO:0000166
Dere08g1276 1025 Gene3D - 89 162 - -
Dere08g1276 1025 NCBIfam copper ion binding protein 174 233 IPR006122 GO:0005507
Dere08g1276 1025 NCBIfam copper ion binding protein 96 160 IPR006122 GO:0005507
Dere08g1276 1025 SUPERFAMILY HMA, heavy metal-associated domain 167 239 IPR036163 GO:0046872
Dere08g1276 1025 SFLD Haloacid Dehalogenase 679 956 - -
Dere08g1276 1025 CDD HMA 98 161 IPR006121 GO:0046872
Dere08g1276 1025 CDD HMA 173 234 IPR006121 GO:0046872
Dere08g1276 1025 SUPERFAMILY HAD-like 695 1010 IPR036412 -
Dere08g1276 1025 Gene3D - 688 954 IPR023214 -
Dere08g1276 1025 ProSiteProfiles Heavy-metal-associated domain profile. 95 161 IPR006121 GO:0046872
Dere08g1276 1025 SUPERFAMILY Calcium ATPase, transduction domain A 497 583 IPR008250 -
Dere08g1276 1025 SUPERFAMILY HMA, heavy metal-associated domain 240 309 IPR036163 GO:0046872
Dere08g1276 1025 FunFam Probable copper-transporting ATPase HMA5 823 961 - -
Dere08g1276 1025 Gene3D - 465 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1276 Dere-ChrDere08 16804815 16810892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1276 91 1019 Primary Pumps ATPases AT1G63440 56.791 0.0 1063