Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1275 ATGGAATGGGAAGAAGGTCCACAAAGACTTCATGATTCCCACGATTCTCAGGTCGTTTTGTGGGACAATATTGATCCAGACCACATGACCTATGAGGAGTTACTTGAGTTAGGTGATGCTATTGGAACTCAAAGCTGTGGTCTCTCCCATGAACAGATCTCTTTACTTCCTGTTTCAAAGTACAAATGTGGGTTCTTTTTGAGGAAAAAATCACGGGATGAGAGATGTGTGATTTGCCAAATGGAATATAAAAGAGGGGACAAGCGGATCACTTTACCTTGCAAACATGTCTATCATGCCAGTTGTGGGAAAAGATGGCTTAGCATCAATAAGGCTTGTCCTATTTGTTACACGGAGGTGTTTGCCAACGTTTCAAAGCGCAAATAA 387 0.4186 MEWEEGPQRLHDSHDSQVVLWDNIDPDHMTYEELLELGDAIGTQSCGLSHEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGKRWLSINKACPICYTEVFANVSKRK 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1275 128 Pfam Ring finger domain 75 116 IPR001841 -
Dere08g1275 128 FunFam E3 ubiquitin ligase BIG BROTHER 38 121 - -
Dere08g1275 128 SMART ring_2 76 116 IPR001841 -
Dere08g1275 128 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 121 IPR033276 GO:0004842|GO:0016567|GO:0046621
Dere08g1275 128 SUPERFAMILY RING/U-box 75 123 - -
Dere08g1275 128 ProSiteProfiles Zinc finger RING-type profile. 76 116 IPR001841 -
Dere08g1275 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 124 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1275 Dere-ChrDere08 16790343 16792635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1275 2 125 C3H Transcription Factor Family AT3G63530 55.645 9.09e-45 144