Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1269 ATGACGACGACCTCTTCTCAGGGGTACCATCAACCGTCGTCGATTGAGGAAGTTCGAACACTTTGGATTGGAGATTTACAGTACTGGGTAGACGAAAACTACCTCAGTCACTGCTTCGCTCACACCGGCGAGGTTGTTTCCATAAAGATCATACGAAACAAGATCACTGGACAGCCTGAGGGCTATGGATTTGTGGAGTTTGTTTCCCATGCAGCAGCAGAACGGATTCTGCAAACTTACAATGGGACACAGATGCCTGGAACAGAACAGACTTTCAGGTTGAATTGGGCATCTTTTGGTATTGGGGAGCGGCGTCCTGATGCTGGGCCTGAGCACTCAATTTTTGTGGGGGATCTGGCACCTGATGTTACAGATTATCTTCTGCAGGAGACATTTCGAGCCCATTATCCTTCAGTTAGAGGGGCCAAAGTAGTGACTGATCCTAATACTGGGCGCTCCAAGGGATATGGGTTTGTCAAATTTTCTGATGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGTGTTTATTGCTCAAGTAGGCCAATGCGTATTAGTGCTGCAACCCCAAAGAAGACCACTGGCTTTCAACAGCAATATGCTGCAGCTAAAGCAATTTATCCAATCCCGGCTTATACCACCCCAGTAAATGCAGTTCCACCAGATTATGACATGAATAATACAACTATTTTTGTTGGTAATTTGGATCTTAATATCACAGAAGAGGAGCTGAAGCAAACCTTTTTGCAATTTGGGGAAATTTTATCTGTCAAGATTCAGGCTGGCAAAGGATGTGGTTTTGTTCAATTTGGGACTAGAGCATCTGCTGAAGAAGCCATTCAGAGGATGCAGGGAAAGATGATCGGTCAACAAGTTGTACGAATTTCTTGGGGTAGGAGCCTAACAGTCAGACAGGACTTACCTGGTGGCTGGGGCCCACAGATGGATCCAAGTCAGTGGAGTGCCTACTATGGATATGGTCAGGGCTATGAAGCTTATGCTTATGGGGCAGCTCAGGATCCTTCCTTGTATGCATATGGTGCTTATGCTGGTTATACACAGTACCCCCAGCAGGTGGAAGGTGCTCAAGACATGGCATCTATGGCTATGCCTAATATGGAACAAAGAGAGGAGTTATATGAGCCGCTAAGTATGCCTGATGTAGATAAGCTAAATGCTGCATATCTGTCAGTACATGGAAGTGCCATTTTAGGGCGGTCCCTCTGGCTGAAAACCTCGCCCTTCGGACAGCAAGCTTAG 1263 0.4616 MTTTSSQGYHQPSSIEEVRTLWIGDLQYWVDENYLSHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGVYCSSRPMRISAATPKKTTGFQQQYAAAKAIYPIPAYTTPVNAVPPDYDMNNTTIFVGNLDLNITEEELKQTFLQFGEILSVKIQAGKGCGFVQFGTRASAEEAIQRMQGKMIGQQVVRISWGRSLTVRQDLPGGWGPQMDPSQWSAYYGYGQGYEAYAYGAAQDPSLYAYGAYAGYTQYPQQVEGAQDMASMAMPNMEQREELYEPLSMPDVDKLNAAYLSVHGSAILGRSLWLKTSPFGQQA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1269 420 SMART rrm1_1 20 95 IPR000504 GO:0003723
Dere08g1269 420 SMART rrm1_1 230 297 IPR000504 GO:0003723
Dere08g1269 420 SMART rrm1_1 113 187 IPR000504 GO:0003723
Dere08g1269 420 Gene3D - 18 98 IPR012677 -
Dere08g1269 420 Gene3D - 101 205 IPR012677 -
Dere08g1269 420 CDD RRM2_SECp43_like 111 190 - -
Dere08g1269 420 FunFam polyadenylate-binding protein RBP45 212 308 - -
Dere08g1269 420 FunFam Polyadenylate-binding protein RBP47B 100 202 - -
Dere08g1269 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 303 - -
Dere08g1269 420 Gene3D - 217 304 IPR012677 -
Dere08g1269 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Dere08g1269 420 SUPERFAMILY RNA-binding domain, RBD 10 87 IPR035979 GO:0003676
Dere08g1269 420 CDD RRM1_SECp43_like 20 100 - -
Dere08g1269 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 183 IPR000504 GO:0003723
Dere08g1269 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Dere08g1269 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Dere08g1269 420 SUPERFAMILY RNA-binding domain, RBD 105 200 IPR035979 GO:0003676
Dere08g1269 420 SUPERFAMILY RNA-binding domain, RBD 207 330 IPR035979 GO:0003676
Dere08g1269 420 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Dere08g1269 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
Dere08g1269 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1269 Dere-ChrDere08 16717740 16722192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1269 20 307 Eukaryotic Initiation Factors Gene Family AT1G22760 27.645 3.99e-24 103