Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1268 ATGGCCGAAACCCCTAGGAAGTCTCTTCGATCTCCCGCAAAATGCAAACAACAACCCAAATTGGATGCCAAATCCTCACCCTCGGTAAGCCCTGTAACTCCACAATCTTCAGCTCCTCGCAGATCGACCCGCCGGAATTTGCTTGGCTTTGATTCTATCAGTCCTCAGAGACCTCTCGATCCCATTGATGAACTTTGTGAACATTCATCGAAAACTCCAAAGAAGGGCAAAACCAGGGAGAGTGTGGATTTGAAGAGGTCTCGTCGATCAATAGATTATGCTGAAGAACCTAGCAAAGATAAAGTGATAACTCGTAGCAAGGGAACTAGGGGAAAGAGTTCAATCGACAAAGCACTTAAAAAAGAGAACAATGCTGGATCTGCAAAATGCCCGACGTCTGCTGCAAGGGGTGAAAATTTGAAACGTAGAAATGGTAAAGATTCAGTTGAAGTTTCTTTCGCTCCTGCATCGCCTGATCAATCGGAAACTAAGAAGAGGAAGAGAGTTGATGAAAGAACGGTTGTTACTAGAGCTATGGTTGCAAGAAATGGGAAATCTGAGAAGGGGCAAAAGAGCAGCAGGTCACCTAAGAGACGGGTGTATTATAAAAAAGTGATATATGATGGGGGTGAGTTTGAAGTGGGCGATGATGTTTATGTGAAGAGGAGAGAAGACGCCAGCTCAGATAACGAAGACCCAGAAGTGGAGGAATGTAGGTTGTGCTTTAGTTCTGGAAATGATGTTATGATTGAGTGTGATGATTGTTTAGGTGGGTTTCATTTGAAATGTTTGACTCCACCATTAGAGGAGGTTCCAGATGGAGATTGGATTTGTGGGTTTTGTGAGGCTCGTAAGCTGGGTAGAGACGTTAACTTTCCGATGCCTCCAGAGGGTAAGAAACTAGTTAGGACATGGAGGGAGAAGCTTCTTTCTAGTGATTTGTGGGCTGCTCACATTGAAAGTATATGGAAAGAAGTAGATGGTAGCTATCGGTGTCGGGCAAGGTGGTATGTGATCCCAGAAGAGACAGCTATTGGCAGACAGCCTCATAACCTGAGGAGGGAGCTATATAGAACAAACGATTTTGCAGACATCGAGATGGAATCTGTCATTAGACACTGCTATGTCATGACCCCAAAAGAATTTGCCAAGGCCAATGAGGGAGATGACATTTTCTTTTGTGAATATGAATATGACGTTCATTGGCATAGTTTCAAGCGTCTTGCAGAGATTGACAATGACAAAGAGGATGGTGAAGACACCGACAGTGATGAAGATTGGAATCTCTGCAAGGAACCAGACTCTGATACAGATGATGATGTTGAATATGAAGCAGAGAATATAAAATATCCACAATCTCAGTCATCAGCAAATAATGCATTAGCTGCAAATCTGCGCAAGGGACAGTTTTTTGGTCTTCAAAAGATCGGTACTAAAAAAATTCCACAGTTTGTAAGGACCCACAAACAGACTGATCTTGAGAGAGCAAAGGCTATGCTGCTGTTGTCATCATTGCCTAAATTTTTACCTTGTAGGAATAGAGAAATGGAGGAGATAACTTCATTCATAAAAGGTGCTATCTGTGATGATCAATGTCTGGGACGTTGCTTGTATATCCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTGCTATCAGCAATGAGAAATTTGAGGTCAGAAGTTGACGCAGGAATGATAAGACCCTACTGTTTTGTGGAGGTTAATGGTCTGAAATTGGCATCTCCAGAGAATATTTACAGGGTCATATACGAGGCATTAAATGGGCACAGGGTCAGCTGGAAAAAGGCCCTTCACTTGCTAAATGAGAGATTTGTAGAAGGGAAGAAAACTGGAGAAGAGGCTGATCGACCATGCATTCTGCTTATTGATGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTTCTTTACAATATTCTTGATTGGCCTACTAAGCCACATTCCAAACTAATTGTGATAGGGATAGCAAACACCATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGTCGAATGGGCATTCAGAGGCTTTGTTTTGGCCCATATAATTATCAGCAGCTTCAGGAAATCATTTCAAGTCGCTTGAAGGGAATAGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCTCGTCGTGCTTTGGAGATATGCCGACGTGCTGCAGAAATTACAGATTATCGTATTAAGAAGCTTGCTTCAAACCCTGACTTAGCTGCAGCAGGAAAGGGACTTATCACTATGGTAGATGTTGAAGCTGCCATCCAAGAAATGTTCCAAGCTCCTCATATTCAAGTGATGAAAAGCTGTTCTAGATTTAGCAAAATCTTCCTGACAGCCATGGTGCACGAGCTTTATAAAACAGGAATGGGGGAAACCAATTTTGAAAAGTTGGCAATGACGGTGTCGTGTCTCTGTACCAGCAACGGAGAAGTGTTTCCCGGATATGATACGCTCCTGCAAGTTGGCTGTAGGCTAGGTGAATCCAGGATTATTTTATGTGAAGCTGGTGCCAAGCACAGGTTGCAGAAGTTACAGCTCAACTTCCCCAGTGATGATGTCGTCTTTGCGCTGAGAAACTGCAAGGATTTACCTTGGTTGGCCAAGTATTTAATTTAG 2673 0.4287 MAETPRKSLRSPAKCKQQPKLDAKSSPSVSPVTPQSSAPRRSTRRNLLGFDSISPQRPLDPIDELCEHSSKTPKKGKTRESVDLKRSRRSIDYAEEPSKDKVITRSKGTRGKSSIDKALKKENNAGSAKCPTSAARGENLKRRNGKDSVEVSFAPASPDQSETKKRKRVDERTVVTRAMVARNGKSEKGQKSSRSPKRRVYYKKVIYDGGEFEVGDDVYVKRREDASSDNEDPEVEECRLCFSSGNDVMIECDDCLGGFHLKCLTPPLEEVPDGDWICGFCEARKLGRDVNFPMPPEGKKLVRTWREKLLSSDLWAAHIESIWKEVDGSYRCRARWYVIPEETAIGRQPHNLRRELYRTNDFADIEMESVIRHCYVMTPKEFAKANEGDDIFFCEYEYDVHWHSFKRLAEIDNDKEDGEDTDSDEDWNLCKEPDSDTDDDVEYEAENIKYPQSQSSANNALAANLRKGQFFGLQKIGTKKIPQFVRTHKQTDLERAKAMLLLSSLPKFLPCRNREMEEITSFIKGAICDDQCLGRCLYIHGVPGTGKTMSVLSAMRNLRSEVDAGMIRPYCFVEVNGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEITDYRIKKLASNPDLAAAGKGLITMVDVEAAIQEMFQAPHIQVMKSCSRFSKIFLTAMVHELYKTGMGETNFEKLAMTVSCLCTSNGEVFPGYDTLLQVGCRLGESRIILCEAGAKHRLQKLQLNFPSDDVVFALRNCKDLPWLAKYLI 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1268 890 SMART BAH_4 210 409 IPR001025 GO:0003682
Dere08g1268 890 MobiDBLite consensus disorder prediction 160 175 - -
Dere08g1268 890 SMART PHD_3 237 282 IPR001965 -
Dere08g1268 890 ProSitePatterns Zinc finger PHD-type signature. 238 281 IPR019786 -
Dere08g1268 890 Pfam AAA lid domain 711 744 IPR041083 -
Dere08g1268 890 Gene3D - 489 684 IPR027417 -
Dere08g1268 890 MobiDBLite consensus disorder prediction 414 438 - -
Dere08g1268 890 ProSiteProfiles BAH domain profile. 293 409 IPR001025 GO:0003682
Dere08g1268 890 MobiDBLite consensus disorder prediction 1 196 - -
Dere08g1268 890 FunFam Origin recognition complex subunit 1 301 492 - -
Dere08g1268 890 Pfam BAH domain 318 406 IPR001025 GO:0003682
Dere08g1268 890 Gene3D - 181 432 IPR043151 -
Dere08g1268 890 MobiDBLite consensus disorder prediction 21 50 - -
Dere08g1268 890 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 342 884 - -
Dere08g1268 890 SMART AAA_5 533 687 IPR003593 GO:0016887
Dere08g1268 890 ProSiteProfiles Zinc finger PHD-type profile. 235 284 IPR019787 -
Dere08g1268 890 FunFam Origin recognition complex subunit 1 233 300 - -
Dere08g1268 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 286 IPR013083 -
Dere08g1268 890 MobiDBLite consensus disorder prediction 415 438 - -
Dere08g1268 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 748 IPR027417 -
Dere08g1268 890 FunFam Origin recognition complex subunit 1 686 778 - -
Dere08g1268 890 SUPERFAMILY FYVE/PHD zinc finger 225 286 IPR011011 -
Dere08g1268 890 Pfam PHD-finger 238 283 IPR019787 -
Dere08g1268 890 MobiDBLite consensus disorder prediction 61 123 - -
Dere08g1268 890 FunFam Origin recognition complex subunit 1 490 689 - -
Dere08g1268 890 Pfam ATPase family associated with various cellular activities (AAA) 538 683 IPR003959 GO:0005524|GO:0016887
Dere08g1268 890 Gene3D - 685 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1268 Dere-ChrDere08 16709371 16716537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1268 141 889 Core DNA Replication Machinery Family AT4G14700 66.184 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere08g1268 AAA 1.5e-18 CL0023