Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1263 ATGAGGAAGCCCGAGCCCTCTGAGAAAAACAAGCAGCTTAGAAAGGGATTGTGGTCTCCAGAAGAAGATGACAAGCTCATGAGGTACATGCTCAACAATGGACAAGGTTGTTGGAGCGACGTGGCCAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGCGCTTTTTCACCCCAAGAACAACAACTCATCATCCATTTGCATTCCCTTCTGGGCAACAGATGGTCTCAAATAGCGACAAGCTTGCCTGGACGAACAGACAATGAAATTAAGAACTTCTGGAACTCCACTGTCAAAAGAAGACTCAAGAACTCGTTCACAGCCACAACCTCACCAAACGCAAGCGAGTCTTCATCTGAGGCTACTAAAGACATGGGAGGGTATATTTCTACACAAGATCAACAACATAGCTTTATGCCTATGTTCAATTCATCTCCACTTCCTTTGCTCGAGCATGAACTTATAAACATGCAATCTACGAGCGGATTCTTCAACAGTACAAGGCCATGGTTCATAGAAAGTGAAGTGCTTGGAAGTGTAAATACTGGATCAGAAAGAGAGGTATTTGTTCCTCCTCTAGAGAGTACTGTTAATCTGAGAGTGGACCACTGGTACACTAACAATACTTACTTTGATGACATAAAAAGTAGCAACGATAACAGATCTAGGGTGGAGAATTTGTTTCAGCAAGAATTACCCAAGGGAATGGGAGAGTGGGAATTGGAGGATTTGATGAAAGATATTCCCTCCTTTCCCTTACTTGATTTTTCTTGCTGA 822 0.4331 MRKPEPSEKNKQLRKGLWSPEEDDKLMRYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQQLIIHLHSLLGNRWSQIATSLPGRTDNEIKNFWNSTVKRRLKNSFTATTSPNASESSSEATKDMGGYISTQDQQHSFMPMFNSSPLPLLEHELINMQSTSGFFNSTRPWFIESEVLGSVNTGSEREVFVPPLESTVNLRVDHWYTNNTYFDDIKSSNDNRSRVENLFQQELPKGMGEWELEDLMKDIPSFPLLDFSC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1263 273 FunFam Transcription factor MYB46 69 139 - -
Dere08g1263 273 MobiDBLite consensus disorder prediction 120 140 - -
Dere08g1263 273 FunFam MYB transcription factor 12 68 - -
Dere08g1263 273 CDD SANT 18 62 IPR001005 -
Dere08g1263 273 SMART sant 14 64 IPR001005 -
Dere08g1263 273 SMART sant 67 115 IPR001005 -
Dere08g1263 273 Gene3D - 12 68 - -
Dere08g1263 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere08g1263 273 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dere08g1263 273 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Dere08g1263 273 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dere08g1263 273 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Dere08g1263 273 Gene3D - 69 141 - -
Dere08g1263 273 PANTHER MYB DOMAIN PROTEIN 55 8 178 - -
Dere08g1263 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Dere08g1263 273 CDD SANT 70 113 IPR001005 -
Dere08g1263 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1263 Dere-ChrDere08 16636015 16637212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1263 1 266 MYB Transcription Factor Family AT5G12870 45.763 5.80e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g1263 Myb_DNA-binding 2.7e-12 CL0123