LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g1262	ATGGCTTGTATATCTCCCAAGACCTCCTATTCCATCCTCTCCTCTCTTCACAAACCCACGCCATTCAATTCCCTACGGCTCCGTTCACTATCCTCCAAGCAATCAAATTTCAGTTTCAACAAATTCAACCTACATGACACGATAATTAAAGTTTCATCTTCTAAACCCTTGCAATTCCCAAAATTTGCTTTTTCTGTCAGACCCAGCGAGACAGATCCGAGTGTTACAGCCTCTGCTGCTGCTAGTGCTCATGCCGTTGAGCCATGGGAAGGCGCAGAGCTGAAGCCGTTAATGGCTTCCATCGCAACGGGACTCATCCTCTGGTTCCTCCCTAACCCTTCAGGCGTTTCCAGAAACGCATGGCAGTTACTATCGATTTTCATGGCCACCATTGTGGGCATCATCACTCAGCCTCTGCCTCTGGGTGCTGTGGCTATGATCGGCCTGAGTGCTTCCGTACTCACGAAGACTCTACCCTACGCCGCCGCATTCTCCGCCTTCGGCGACCAGATCCCATGGCTCGTAGCTCTCGCATTCTTCTTCGCCAAAGGATTCATCAAAACAGGGCTAGGCACTCGAATTGCCTACCACATCGTCTCCGTCGCTGGTTCATCGTCCATAGGCTTAGGCTACAGCCTGGTGTTCAGCGAGGCCTTGCTAGCACCCGCGATACCCTCCGTTTCTGCCAGAGCAGGTGGCATTATTCTGCCGTTGGTGAAATCTCTATGCGCGGCTTGCGGTAGCAACGTTGGGGATGGAACTGAGAACCGACTAGGGTCCTGGCTAACGTTGACGTGCTTCCAAACATCCGTCATCTCGTCCGCCATGTTCTTGACGGCGATGGCCGCGAATCCGCTGTGTGCAACGCTGACGTTTAACACGATCAAGACGACGATTGGGTGGACCGATTGGGCTAAAGCGGCGATTGTACCTGGGCTGGTATCTTTGATTTTGGTGCCGTTGATTCTGTACGTGATATACCCACCTGCTGTGAAGAACAGTCCCGATGCACCCAGGCTTGCCAGAGAGAAGCTTAAACAGATGGGACCCATGGCTCGCAAGGAGAAGATTATGGCTGCAACTCTGCTTCTCACGGTGATTATAATAATGAGTCTGACCGCAGAGAATCCCACCCAAATCATTGACTTTAATTTTCCATTCCTGACCTCACAAATATTTATCATTCTTTCTGAAGCATATCTTCCCACCTGTGAGTTATGTCTTCTGGACGCCGGAAAAGCCAAAAGTGCCAATGGGCAAAGATATTCCAGAATCGCACTTCCACTGCCATCCAAACACGCGTCAATTCCTATCCTCTTCATTGGTTCACATCTCTGTTCACCAAAAGCAATAATCCGATGTGGATACTTACCCATTCAAAGATCGCCACGTAATAACATCACTCCTTCTTTTCTGGCTTCTTTAGATGTGACATTTTCACCTCTAAGGCGGAATTTACAAAACGCTAAAGCACGGAAGCCACCAATTCCTCACCTAGAAACAAAGCCGCATATCTCAATCATTATCTGCACCGTACGCTCCAAATCCAGCGGCCCACATTCTCCCCCAGCTTTGCTACGAGTTTCCCTCCTTTCTTGTCCACGAGATTCTTCTTCTCTCACACATTCCATATCCGTCTCTCCAGTCTTTACTCATGGTGCTGCTCTACTAAACGCTGCTCCAGCCCCGATATTAGAAGCCATGGCGTCCATGCCACTCACTACCTCGTCCTCCACCCTTCCATCTCTTCGATTACGTTCCTCCAAGCTCACGCCATCGAAATCTGTACAACTTCGCTGTTTGAGTTCCTTGAATTCTACCAACTTTAGAGGCCTTAAACGCAGTTCTTCTATTTTCTCAGTTCCGTCTCTGAGACTTTCTAAGGCTGGTTTCAATATCACACCCAGTCGGAAATATCACAGTGTCAGAGCCTCCGCTGCCGGAGCTTCTGTCGCTCCAACTCCGGTGGCTCAGCCGAGGCAGGGTGCTGCAGTGAAACCTCTACTGGCTTCTATAGCGACGGGGGTTATACTCTGGTTCGTTCCTGTGCCTTCCGGGGTGTCCAAGAACGCGTGGCAACTGTTGGCTATTTTCTTGGCCACAATCGTCGGCATTATTACGCAGCCATTGCCGCTTGGTGCTGTGGCTGTATTGGGTTTGGGTGTTTCGGTTCTTACAAAGACCCTTACGTTCGCTGCAGCATTTTCAGGCTTTGGCGATCCCATCCCGTGGCTCATTTGTCTGGCCTTCTTCTTTGCCAGAGGGTTTATTAAGACAGGTCTAGGCAATCGAATTGCTTATCAATTTGTATCTCTTTTTGGTAGCTCATCTCTGGGTTTAGGATATAGTTTAGTTTTTAGCGAGGCCTTGTTGGCTCCGGCGATTCCTTCCGTTTCAGCAAGAGCAGGTGGAATTTTTCTTCCGCTAGTAAAATCCTTGTGTGCGGCTTGTGGTAGTAATGTGGGCGATGGAACCGAGAATAGGCTAGGATCGTGGTTAATGCTGACTTGCTTTCAAACTTCGGTGATTTCGTCGGCAATGTTTTTGACTGGAATGGCTGCGAATCCCCTGTGTGCCACTCTGACTCAAAGCTCCATCAACCAGACGATTGGTTGGTTAGACTGGGCCAAAGCTGGGATCGTCCCCGGTTTGCTGTCATTGATATTGGTACCATTCATTTTGTATGTGATTTACCCGCCAACAGTGAAATCCAGTCCTGATGCGCCCAAGCTTGCTAGGGAGAAGTTGCAGAGCATGGGACCAATGAGTGTAAATGAGAAGATAATGACTGGGACTCTGCTTCTTACGGTGGGGCTTTGGGTTTTTGGAGGAGTTCTTAATATAGATGCTGTAAGTGCTGCTATTCTGGGATTATCTGTGCTCCTTGTCACAGGGGTTGTTACATGGAAGGAGTGCTTAGCTGAGGGAGTTGCCTGGGATACCCTCACGTGGTTCGCTGCCCTCATCGCAATGGCTGGGTATCTGAACAAATATGGTCTCATTTCCTGGTTCAGCCAAACTGTTGTCAAGTTTGTTGGTGGATTGGGTCTGTCATGGCAGCTATCTTTCGGCATCCTGGTCCTTCTCTACTTCTATTCACATTACTTCTTTGCAAGTGGAGCTGCTCATATCGGTGCCATGTTTACAGCCTTCCTTTCTGTTGCTAGTGCTCTAGGCACTCCACCATACTTTGGAGCCATGGTGTTATCCTTCCTCTCCAACCTCATGGGTGGCCTTACCCACTATGGAATTGGGTCAGCACCTGTATTTTATGGTGCCAACTATGTTCCCCTTGCGAAATGGTGGGGCTATGGGTTCATTATAAGTATTGTTAACATTATAATTTGGCTTGGGGTTGGAGGAGCTTGGTGGAAAGTCATTGGCTTGTGGTGA	3393	0.4901	MACISPKTSYSILSSLHKPTPFNSLRLRSLSSKQSNFSFNKFNLHDTIIKVSSSKPLQFPKFAFSVRPSETDPSVTASAAASAHAVEPWEGAELKPLMASIATGLILWFLPNPSGVSRNAWQLLSIFMATIVGIITQPLPLGAVAMIGLSASVLTKTLPYAAAFSAFGDQIPWLVALAFFFAKGFIKTGLGTRIAYHIVSVAGSSSIGLGYSLVFSEALLAPAIPSVSARAGGIILPLVKSLCAACGSNVGDGTENRLGSWLTLTCFQTSVISSAMFLTAMAANPLCATLTFNTIKTTIGWTDWAKAAIVPGLVSLILVPLILYVIYPPAVKNSPDAPRLAREKLKQMGPMARKEKIMAATLLLTVIIIMSLTAENPTQIIDFNFPFLTSQIFIILSEAYLPTCELCLLDAGKAKSANGQRYSRIALPLPSKHASIPILFIGSHLCSPKAIIRCGYLPIQRSPRNNITPSFLASLDVTFSPLRRNLQNAKARKPPIPHLETKPHISIIICTVRSKSSGPHSPPALLRVSLLSCPRDSSSLTHSISVSPVFTHGAALLNAAPAPILEAMASMPLTTSSSTLPSLRLRSSKLTPSKSVQLRCLSSLNSTNFRGLKRSSSIFSVPSLRLSKAGFNITPSRKYHSVRASAAGASVAPTPVAQPRQGAAVKPLLASIATGVILWFVPVPSGVSKNAWQLLAIFLATIVGIITQPLPLGAVAVLGLGVSVLTKTLTFAAAFSGFGDPIPWLICLAFFFARGFIKTGLGNRIAYQFVSLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCAACGSNVGDGTENRLGSWLMLTCFQTSVISSAMFLTGMAANPLCATLTQSSINQTIGWLDWAKAGIVPGLLSLILVPFILYVIYPPTVKSSPDAPKLAREKLQSMGPMSVNEKIMTGTLLLTVGLWVFGGVLNIDAVSAAILGLSVLLVTGVVTWKECLAEGVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYFGAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIISIVNIIIWLGVGGAWWKVIGLW	1130

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g1262	1130	CDD	ArsB_NhaD_permease	702	1124	-	-
	Dere08g1262	1130	Pfam	Sodium:sulfate symporter transmembrane region	95	368	IPR001898	GO:0016020\|GO:0022857\|GO:0055085
	Dere08g1262	1130	Pfam	Sodium:sulfate symporter transmembrane region	667	1130	IPR001898	GO:0016020\|GO:0022857\|GO:0055085
	Dere08g1262	1130	PANTHER	DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC	648	1130	IPR030676	-
	Dere08g1262	1130	NCBIfam	DASS family sodium-coupled anion symporter	682	1124	IPR001898	GO:0016020\|GO:0022857\|GO:0055085
	Dere08g1262	1130	NCBIfam	DASS family sodium-coupled anion symporter	111	368	IPR001898	GO:0016020\|GO:0022857\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g1262	Dere-ChrDere08	16626739	16632362	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g1262	88	366	Antiporters	AT5G12860	82.079	1.80e-151	462