Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1259 ATGGGAGCAGGTTGCTCTAAGCTCTCTCTATGCTGGTGGCCGTCTAACATGAAATCAAATCTTCAGGACTTGTCTGATGATCATGAGAACAAGAATGAGAAGGACTGTTTGCCTGGGTTCACTGAGTACAGCTTGGATGAACTAAAATCTGCAACTTCAGGCTTTTCACCTGACAAAATTGTCTCCGAGCACGGTGAGAAAGCTCCTAACGTTGTATATAAAGGCCAGCTTGAAACAGATAGGTGGATTGCTGTGAAGCGCTTCAACAAATCAGCTTGGCCTGATCCTCGACAATTCCTAGAGGAAGCACGAGTGGTGGGGCAGCTACGGAGTGAGCGATTAGCTAATTTAATTGGGTTTTGCTGCGAAGGTGAAGACAGATTGCTCGTTGCAGAGTTCATGCCCCATGAAACTCTCTCAAAGCATCTTTTTCATTGGGAGACTCAGCCCATGAAATGGGCAATGAGGCTGAGAGTGGCCTTGTATTTAGCACAAGCATTGGAATACTGCAGCAATAGAGGAAGGGCATTGTACCATGATCTTAATTCTTATAGAATTTTGTTTGACCAGGACGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAGAACAGCAGAGATGGCAGAAGTTACAGTACAAATTTAGCCTTCACCCCTCCAGAGTACTTGAGGACTGGAAGAATCACCCCAGAAAGTGTGATTTACAGTTTTGGCACCCTTTTGCTTGATCTTCTCAGTGGCAAGCATATCCCACCAAGTCATGCACTCGACCTTATAAGAAGCAAAAATATTCTGATGCTGATGGATTCAGGTTTGGAGGGTCTTTTTTCAAATGTTGATGGAACTGAATTAGTGAGATTAGCTTCGCGTTGTTTACAGTATGAACCTCGTGAGAGGACAAATGCCAAGTCACTTGTGACTGCTCTAATTCCTCTTCAGAAAGAAACTTCAGTACCGTCAAATATTTTGATGGGCATACCAGATGGAAGTGCATCATCAAAAGAAACAGTTTCATTGACACCTTTTGGTGAAGCTTGTTCCAAAAGAGATCTCACTGCAATACTTGAAATTTTGGAAAAGGTGGGGTACAAGGATGATGAAGAAGTTGCAGATGAGCTATCGTTCCAAATGTGGACAAATCAAATTCAAGAAACACTAAATTCTAAGAAGCGTGGCGATGCTGCTTTTCGAGCCAAAGACTTCACTACGGCTATCGACTGCTATACACAATTTATTGAAAGTCGGACGATGGTATCACCAACTGTGTACGCCAGGCGTAGCTTATGTTACCTGATGAATGAGATGCCACAAGAAGCTCTTGGAGATGCCACGCAAGCCCAATCAGTATCTCCCACTTGGCACACTGCTTTTTACCTTCAAGCAGCTGCCCTGTTCACCCTTGGAATGGATAATGATGCACAAGAAAGTCTTAAAGACGGCACAACTCTGGAAACCAGAAAGCATATAATTTGA 1473 0.4358 MGAGCSKLSLCWWPSNMKSNLQDLSDDHENKNEKDCLPGFTEYSLDELKSATSGFSPDKIVSEHGEKAPNVVYKGQLETDRWIAVKRFNKSAWPDPRQFLEEARVVGQLRSERLANLIGFCCEGEDRLLVAEFMPHETLSKHLFHWETQPMKWAMRLRVALYLAQALEYCSNRGRALYHDLNSYRILFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRSKNILMLMDSGLEGLFSNVDGTELVRLASRCLQYEPRERTNAKSLVTALIPLQKETSVPSNILMGIPDGSASSKETVSLTPFGEACSKRDLTAILEILEKVGYKDDEEVADELSFQMWTNQIQETLNSKKRGDAAFRAKDFTTAIDCYTQFIESRTMVSPTVYARRSLCYLMNEMPQEALGDATQAQSVSPTWHTAFYLQAAALFTLGMDNDAQESLKDGTTLETRKHII 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1259 490 FunFam probable serine/threonine-protein kinase At5g41260 135 326 - -
Dere08g1259 490 Gene3D Transferase(Phosphotransferase) domain 1 135 327 - -
Dere08g1259 490 Gene3D Phosphorylase Kinase; domain 1 27 133 - -
Dere08g1259 490 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
Dere08g1259 490 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 16 487 IPR045845 GO:0004672|GO:0009742
Dere08g1259 490 Pfam Protein tyrosine and serine/threonine kinase 71 309 IPR001245 GO:0004672|GO:0006468
Dere08g1259 490 SUPERFAMILY Protein kinase-like (PK-like) 37 315 IPR011009 -
Dere08g1259 490 ProSiteProfiles Protein kinase domain profile. 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1259 490 Gene3D Tetratricopeptide repeat domain 383 489 IPR011990 GO:0005515
Dere08g1259 490 FunFam probable serine/threonine-protein kinase At4g35230 383 489 - -
Dere08g1259 490 SUPERFAMILY TPR-like 389 480 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1259 Dere-ChrDere08 16615696 16619524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1259 14 332 Glycoside Hydrolase AT3G07070 31.988 5.66e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Dere08g1259 PK_Tyr_Ser-Thr 5.9e-25 CL0016