Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1248 ATGTCATCCGCAACGGCGTCGTATTGGTGCTATAGATGCGCCCGGTTTGTTCACCTCTCTAGTACTCAGCGCCACATCGCCTGCCCGCACTGCGAAGGTGGCTTCATCGAAGAGATCCAGACCAACCCATCGTCGGACCACCATCTCGGGCCATTCTCATCTGCAGCCATGCCTATCTTCGCCCATGAACCTCAAAGTTCCTTCAATTCAAGGAGACAAGGGTTCCGGAGAAGACGCCGCAACGCCGGCAGCCGATCTCCCTTCAACCCAGTAATCGTTCTCCGTGGACCCGCCGATGGTGGTACCGGAGATGACGGGGGAGATCCCGAGAGAAGTAGTAGCTTCGAATTGTACTATGATGATGGTGATGGCTCCGGTCTCCGACCTTTGCCGCCGGCCATGTCGGAGTTCTTGCTGGGGTCTGGCTTCGATCGGTTGTTGGAGCAGTTCACACAGATCGAAACCAATGGCCTTGGGCGGCTAGAGAACCCGCCGGCGTCCAAATCCGCCATCGAGTCAATGCCGACGATTGAGATTGTGGAGGATCATGTGAGTACGGATACACACTGTGCCATTTGTACAGAAGCGTTTGAGCTGGGTTCGGAGGCGCGTGAAATGCCTTGTAAGCACATTTACCATTCGGATTGCATTGTTCCGTGGCTTTCAATGCGCAATTCGTGTCCTGTGTGTCGCAACGAGTTGCCTTCGGATCGAAATCCTTTGGAAAGTAGAGCATCAGGACAAATCGATGAAGAAACGGTAGGATTGACGATATGGAGGTTACCGGGTGGAGGATTCGCTGTAGGAAGGTTTCCCGGCGGCCGCGGTGATGCGGAGAGTCATTTACCAGTTGTATACACAGAAATGGATGGTGGGCTCAATGCAAATGGAGTTCCTAGAAGAATTTCCCGAGCAATGAGAAGTATCAGAGTTAGCGAAAGACGTGGATTAGGCAGAATATTTCGTAATTTCTTCTCATTCTTCGGGAGGCTTGGGTCTAGGTCAACGTCATCTTCCTCTTCGCATTCCAGTTCTCAGGTTGGGTCCATGAGTAGAAGCCTTAGGCAATTGAGTTCGGTATTCAGTAGGAGCTCGCGGAGTCGCAGTAGTAATTGGGTCTTGGAAGATTAA 1131 0.5217 MSSATASYWCYRCARFVHLSSTQRHIACPHCEGGFIEEIQTNPSSDHHLGPFSSAAMPIFAHEPQSSFNSRRQGFRRRRRNAGSRSPFNPVIVLRGPADGGTGDDGGDPERSSSFELYYDDGDGSGLRPLPPAMSEFLLGSGFDRLLEQFTQIETNGLGRLENPPASKSAIESMPTIEIVEDHVSTDTHCAICTEAFELGSEAREMPCKHIYHSDCIVPWLSMRNSCPVCRNELPSDRNPLESRASGQIDEETVGLTIWRLPGGGFAVGRFPGGRGDAESHLPVVYTEMDGGLNANGVPRRISRAMRSIRVSERRGLGRIFRNFFSFFGRLGSRSTSSSSSHSSSQVGSMSRSLRQLSSVFSRSSRSRSSNWVLED 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1248 376 FunFam E3 ubiquitin-protein ligase RING1-like 152 237 - -
Dere08g1248 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 64 235 - -
Dere08g1248 376 SUPERFAMILY RING/U-box 170 238 - -
Dere08g1248 376 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Dere08g1248 376 Pfam Ring finger domain 189 231 IPR001841 -
Dere08g1248 376 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Dere08g1248 376 Pfam Protein of unknown function (DUF1117) 254 366 IPR010543 -
Dere08g1248 376 CDD RING-H2_RNF126-like 190 231 - -
Dere08g1248 376 MobiDBLite consensus disorder prediction 63 117 - -
Dere08g1248 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 237 IPR013083 -
Dere08g1248 376 SMART ring_2 190 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1248 Dere-ChrDere08 16557011 16558141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1248 129 242 C3H Transcription Factor Family AT5G01980 45.614 7.02e-28 112