Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1246 ATGGGGGAGGAGGTGAAGATGAGCGACTTTGAAGGCGGTGCCGTCGATGATGAGCGAGTCTTCGAGTGGGAGCTGGGCCTTCCCGGCGCCGATGATATCACTCCTCTGTCTTACCCCTTGATCCCCCCGGAGCTCGCTTCTGCCTTCAGTATCTCACCGGAGCCGGGTCGGACGCTCCTCCACGTCAATCGCGCCTCTCACAATACTATATCAAGTATTCGCAGCGGGAGTTCTCAGGATTTCTCATCCAACAATTTCAAGTCCTTTAACGATGACCCGAGTCGCGACCCGATTGTTGTGGAGGCAGATGAAGAGACTGATCGTGATGGGTCGGGCTCCGATTCTAGGAAACTGAGGAAGATTGACTGTACAGAAGAAGCTGATTCCGCCTTGCGCAGGGAGAATTCGATGGAGGATCCATCGGCGAGGACCTTGAAGCGGCCTCGGCTGGTATGGACTCCACAGTTACACAAGCGTTTTGTGGATGTAGTGGCTCATCTAGGAATCAAGAACGCCGTGCCCAAGACAATTATGCAATTGATGAATGTCGAGGGACTGACCCGCGAGAATGTGGCGAGCCATCTGCAGAAGTACCGACTTTACCTGAAGAGGATGCAGGGGCTGTCCAATGAGGGTCCCTCGTCGTCGGACCAGCTCTTCGCATCCACACCTGTGCCTCAAAGTTTACACGAGTCTGGTGGAAGTGGCCATTCGCATGGAAACGGACATCTGCCGGTTCCGATTCCGATGCCATATCCACCGCCTATGATGTCAGTGCCGGTTCTTGGGATGCCACACGCTCATGGTCACATGGGGATGCCGGTGCATAACCATGGTTTCGACTCCCATCCTTATAACATGGTGCAGCAAAGGGATTGGTCCGCCAATAATTATGCTCCTGTTGTATCATACCCTCATGTTGCTCCAAATGATAAATGA 939 0.5346 MGEEVKMSDFEGGAVDDERVFEWELGLPGADDITPLSYPLIPPELASAFSISPEPGRTLLHVNRASHNTISSIRSGSSQDFSSNNFKSFNDDPSRDPIVVEADEETDRDGSGSDSRKLRKIDCTEEADSALRRENSMEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHESGGSGHSHGNGHLPVPIPMPYPPPMMSVPVLGMPHAHGHMGMPVHNHGFDSHPYNMVQQRDWSANNYAPVVSYPHVAPNDK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1246 312 SUPERFAMILY Homeodomain-like 144 204 IPR009057 -
Dere08g1246 312 Gene3D - 144 206 - -
Dere08g1246 312 MobiDBLite consensus disorder prediction 208 245 - -
Dere08g1246 312 MobiDBLite consensus disorder prediction 71 96 - -
Dere08g1246 312 MobiDBLite consensus disorder prediction 71 91 - -
Dere08g1246 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 203 IPR017930 -
Dere08g1246 312 Pfam Myb-like DNA-binding domain 151 199 IPR001005 -
Dere08g1246 312 FunFam Two-component response regulator 143 206 - -
Dere08g1246 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 148 200 IPR006447 GO:0003677
Dere08g1246 312 MobiDBLite consensus disorder prediction 208 235 - -
Dere08g1246 312 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 293 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1246 Dere-ChrDere08 16529169 16530107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1246 1 285 G2-like Transcription Factor Family AT3G46640 56.000 8.06e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere08g1246 Myb_DNA-binding 1.2e-08 CL0123