Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1244 ATGTACTTGAAAGTGCAGAGAAATCTGGAAATTCTGGTCCAAGGATTTGGGGATAACTTGATTAACATGCATGGATTCACTCTGCCTCTAGCTGGCAACGACTTCCTTTGCTGTACTAAACTCTGTTTTAGATCTCTTGGACCTTCCCTGCTTTTCCTGCAAAACCTAGCCAACTCTTCCATACCGTGTTGTAGATTTAGGCATCAACGTGATTTTGATGCCCTTCTATTCCATTCAGGATCCTATACGCCATGTCGCTGGAACTATAAGAAGAAAAGACGAGGTAGTAATACTCTTCTTAAAGCCAGCTGTGGGGAGTCTCCTTATGAAGTTTTGGGTGTATCTCCATCAGCAACTGTGGATGAAATCAAGAAGGCATACAGAAAGCTTGCTCTCAAGTATCATCCCGATGTTAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTTCTTCGCGTAGAAAATATGATTCTGGAAATTGGGGTTTTGATTCTTCATATTATTCTTCTCAAAGAAGCCAAAGTGGTAATGCACAAGCAGAAGAATTTTATGGATTAGGTAATTTTTTGAGGGATGTCCAAATAACAATAGAGGATTTCTTCAAAGATCTTCAAGAAGAATTTAGAAACTGGGAAGCTAACTCTGCTTCACAAGGAAAGCCAAAGACCCTATGGGAGGAATTGGCAGAAATAGGAGAAGAATTTGTAGAATTTCTTGAGAAAGAATTGAACATAGTTGATTCCGAGGTTGATCCAAATAACAATTATAAAACGCCTCAGGGGGAGAATCCTTCTCATACTACTGCTGGCAAAGGCACTCAAGATGAAGCTGGCAAGGGAAACAGCAGCATTGATGATAACCTTGATGAAATAGAAGCCACTCTTGCTCAGTTAAAAAAGGAATTGGGTTTATAG 948 0.3935 MYLKVQRNLEILVQGFGDNLINMHGFTLPLAGNDFLCCTKLCFRSLGPSLLFLQNLANSSIPCCRFRHQRDFDALLFHSGSYTPCRWNYKKKRRGSNTLLKASCGESPYEVLGVSPSATVDEIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRRKYDSGNWGFDSSYYSSQRSQSGNAQAEEFYGLGNFLRDVQITIEDFFKDLQEEFRNWEANSASQGKPKTLWEELAEIGEEFVEFLEKELNIVDSEVDPNNNYKTPQGENPSHTTAGKGTQDEAGKGNSSIDDNLDEIEATLAQLKKELGL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1244 315 SMART dnaj_3 106 163 IPR001623 -
Dere08g1244 315 Coils Coil 292 312 - -
Dere08g1244 315 MobiDBLite consensus disorder prediction 260 292 - -
Dere08g1244 315 Gene3D DnaJ domain 105 227 IPR036869 -
Dere08g1244 315 ProSitePatterns Nt-dnaJ domain signature. 148 167 IPR018253 -
Dere08g1244 315 PRINTS DnaJ domain signature 109 127 IPR001623 -
Dere08g1244 315 PRINTS DnaJ domain signature 127 142 IPR001623 -
Dere08g1244 315 PRINTS DnaJ domain signature 143 163 IPR001623 -
Dere08g1244 315 MobiDBLite consensus disorder prediction 260 299 - -
Dere08g1244 315 ProSiteProfiles dnaJ domain profile. 107 171 IPR001623 -
Dere08g1244 315 CDD DnaJ 108 160 IPR001623 -
Dere08g1244 315 SUPERFAMILY Chaperone J-domain 76 167 IPR036869 -
Dere08g1244 315 Pfam DnaJ domain 108 168 IPR001623 -
Dere08g1244 315 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 78 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1244 Dere-ChrDere08 16521028 16524263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1244 109 169 C2H2 Transcription Factor Family AT1G74250 41.791 1.03e-07 51.2