Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1226 ATGGCGTTATCCAAAACGGCAGGTCCAGTTCCGGTGGCCCAGAACCCTTCTCAACCGGCGAAGCTACGATGGGGCGAGCTGGATGAGGACGATGGGGAGGATCTCGACTTTTTGCTGCCCCCGCGACAGGTCATTGGTCCCGACGAGAACGGGATAAAGAAGGTAATTGAATACAAATTCAATGAAGATGGCAATAAGGTCAAGATCACAACCACCACCCGCACCCGCAAGCTTGCTAATGCTCGCCTCAGTAAGCGAGCCGTCGAGAGGCGATCATGGGCTAAGTTCGGCGATGCCGTTCACGAGGATGTTGGCAGCAGGCTCACCATGGTATCCACCGAAGAGATCCTCCTCGAGCGACCCAGGGCTCCTGGTAGCAAACCAGAAGAACCAAAGGTTGCTGGGGACCCATTGGCACAATTCCAGAAAGGTGCAGTTCTTATGGTCTGTAGGACTTGTGGGAAGAAGGGTGACCACTGGACTTCAAGATGCCCATACAAGGACCTTGCCCCTCCAGTTGAGGGATTTGTTGATAAGCCTGCAGCATCAGAAGCTGCAGCTGCTGCCTCTGGTCCAGCCAAGGGAGCATATGTTCCTCCTGGTATGAGAGCAGGGGCTGAAAGGACTGGATCAGACATGCGCCGCAGGAATGATGAAAATTCTGTTCGTGTCACCAACCTCTCAGAGGACACCAGAGAACCAGATTTACTGGAGCTGTTCCGTCCTTTCGGGGCAGTGAGCAGAGTCTATGTAGCTATTGATCAAAAGACTGGCATCAGTAGAGGATTTGGCTTCGTTAATTTTGTAAACAGAGAAGATGCACAGAGAGCTATTAACAAGCTCAATGGATATGGTTACGACAACCTCATCCTTAGAGTTGAATGGGCCACCCCGAGGACAAACTAA 906 0.5199 MALSKTAGPVPVAQNPSQPAKLRWGELDEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFNEDGNKVKITTTTRTRKLANARLSKRAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPVEGFVDKPAASEAAAAASGPAKGAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGISRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1226 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 288 IPR000504 GO:0003723
Dere08g1226 301 PIRSF Transl_init_eIF-3_RNA-bind 13 301 IPR017334 GO:0003743|GO:0005737|GO:0005852
Dere08g1226 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Dere08g1226 301 MobiDBLite consensus disorder prediction 1 22 - -
Dere08g1226 301 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 21 300 IPR017334 GO:0003743|GO:0005737|GO:0005852
Dere08g1226 301 Pfam Eukaryotic translation initiation factor 3 subunit G 43 169 IPR024675 -
Dere08g1226 301 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 28 297 - -
Dere08g1226 301 CDD RRM_eIF3G_like 221 296 IPR034240 -
Dere08g1226 301 FunFam Eukaryotic translation initiation factor 3 subunit G 185 301 - -
Dere08g1226 301 SMART rrm1_1 221 294 IPR000504 GO:0003723
Dere08g1226 301 Gene3D - 179 301 IPR012677 -
Dere08g1226 301 CDD eIF3G 50 168 IPR024675 -
Dere08g1226 301 SUPERFAMILY RNA-binding domain, RBD 218 300 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1226 Dere-ChrDere08 16374577 16376663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1226 18 299 Eukaryotic Initiation Factors Gene Family AT3G11400 70.064 5.66e-156 436