Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1218 ATGTTGCGGAAAAATCACCAGCACTTGCGTGACGGTTCAGGCATACTGTTTCCAGGAGCTTTCATGAGTTCATATGGACTAGGTAGTCTTAAGGGACCCATCATCCTATCTCTTCCTCCTGCTGCTGCATATTTTGGTGTCTTCCTCTCCCTCTGCTCTAAACTCTGTTCCTTCTTACTCCCCAGGTATTGTAATTGTGATAGTTTTGGTTTCTCGTGTACACGTTCCTTCACGGATTCCAATTGCTTCTCCAGTTTCATCAACGGATATGAATCCAACCAAGCGCCTGTTACGCTGAGTTATGATCTGTATGCTGATCCTGTTAATGGAATCCAAACCAGCGACCCATTAATGAACTTTGGGTTCATGGATACCAACTATGCCGGACCCCCTGCTTCTCTGTCTTCAGTTAGTACGGATTCTGATTCTCCTTTGGATGACACTGACTTCTCTGGAGCCGTGCTTGAGTACATAAATCAAATGCTTATGGAAGAGGACATGGAGCAGAAGCCCTGCTTGTTTTATGATTCCTTGGCTCTTGAATCTCTTGAGGAATCATTGTACGAGGTTATTGGGAACAAATGCCCCTCTGATTCCTCCATTCACCATCATCTTGACAACTATCACCATGTGAAGAGCTCCGAGGAAAGTGTCTCAGGCAACACCAGTGTTCATATTAGTAGTGGCAGTAATGCTGCCGCTGGTACTACCAACTCCGTTGAGTCCAAATTGTGTAACGTTGATGTCACAAAGTACAAGCCTTCTCTACTGCAAACCTCTATACCTGATAATTTCGTTTTCAAGTCTCCTTCAACTTCCACGGCACAATTTTCCATGAACAAAACGAAAACCTTCAATAATCATAGCCGTAATAAACATGATGGGACTGTGGGGAATTACAGGACCGGATTTTCAGATTCTGCATTCCTTAGCAAGAGTGAGTCGGTGTTGCAATTTGAGAGAGGTGTAGAGGAAGCCAGAAAGTTTCTGCCTAAAGATAAGCCATTGGTTATTGACATAGAGCCCAACACCATTTCTCCTTCACCCGGAAAGGCTATAAAGGTTGTGGTTAAGCCGGAGAGATGTGAAAGGGAGCTCGTGCCTCCTAACTCAAGAGTAAGGAGGAATCATGAGCGGGAAGATGAGATAGATATAGAAGATGGGAGAAGCAGGAAGCAATCAGCAGTTTTCATGGATGACAGTGAGCTGTCGGAATTTTTTGATAAGGTACTTATTGGCACTGGGTGGGGGAAAGATCCTCCTCTCATGTGTATTTGCCATGAAAATTGCCTTGATGGAGCACATACGAACGTGCAGAAAAATGAAGAACCAAACAAGTCTAGTGATGGAAAGGGTCGTTCTAGAAAGCAGAGCTATAAAACGGAAGTGGTGGATCTAAGGACACTACTAATTCAATGTGCACTAGCTGTGTCATCCGGTGATCGCGGGAATGCTAACATGTTATTAAAGCAGATTAGGCAGCATTCTTCTTCAATAGGGAAAGGCTCTCAGAGGTTGGCCTATTACTTTGCGAATGCCCTTGAGGCACGCATGGCTGGCACTGGCTCTCAGATTCACACTGCTTTATCCTCCAAGAGAACTTCTGCTACAGACATGTTAAAAGCATACCAACTGTATATTACAGCCTGTCCATTTCACAAGATTGCAATCATTTTTGGAAACCATACAATTATGCATATCTCCAGTGAGGTGGAAACACTTCATATTGTAGATTTTGGCATTCTTTATGGCTTCCAATGGCCTTCCCTTATCCTTCGTCTCTCCAAACGACATGGTGGACCCCCCAAGCTGCGCATCACAGGGATTGATCTTCCACAATCTGGTTTCAGGCCAGCAGAGAGAGCCCAAGAGACGGGGCGTCGCCTTGCAAAGTATTGTAAGCGCTTCAATGTTCCATTTGAGTATAATGCTATAGCGCAGAAATGGGAAACCATCAAGGTTGAGGACCTAAAGATAAAGAAAGATGAATTCGTAGTTGTGAATTGTCTGCTTCGATTTAAGACTCTGCTTGATGAGACAGTTGTGGTGAATAGTCCTAGAGATGCTGTTTTAAAGTTAATAAGAAAAGTGAATCCCAGTATATTTTTGCAGGCTGAAGTCAACGGGTGCTATAATGCACCATTCTTTGTGACACGATTCCAGGAGGCTCTTTTCCATTACTCGTCACTATTTGACATGCTAGACACTATTGTTGATGGTGAAGATCCCATGAGGTTGATGCTTGAAAGGGAGTTTCTTGGGCGAGAGGTAATGAATATTATAGCTTGTGAGGGTTTTGAGAGGGTTGAGAGACCTGAGACGTACAAGCAATGGCAGCTTCGGAACATGAGGGCAGGGTTTAGGCAGCTGCCCTTGGATCGCCTTCTCATCAGCAAATTCAGGGGCAAGTTGAGAGAAGTGTACCACAGTGACTTCATGCTTGTTGAAGATTGCAATTGGATGCTTCAAGGTTGGAAAGGCAGAATTGTTTATGCTTCCTCCTCTTGGGTTCCAGCATAG 2520 0.4429 MLRKNHQHLRDGSGILFPGAFMSSYGLGSLKGPIILSLPPAAAYFGVFLSLCSKLCSFLLPRYCNCDSFGFSCTRSFTDSNCFSSFINGYESNQAPVTLSYDLYADPVNGIQTSDPLMNFGFMDTNYAGPPASLSSVSTDSDSPLDDTDFSGAVLEYINQMLMEEDMEQKPCLFYDSLALESLEESLYEVIGNKCPSDSSIHHHLDNYHHVKSSEESVSGNTSVHISSGSNAAAGTTNSVESKLCNVDVTKYKPSLLQTSIPDNFVFKSPSTSTAQFSMNKTKTFNNHSRNKHDGTVGNYRTGFSDSAFLSKSESVLQFERGVEEARKFLPKDKPLVIDIEPNTISPSPGKAIKVVVKPERCERELVPPNSRVRRNHEREDEIDIEDGRSRKQSAVFMDDSELSEFFDKVLIGTGWGKDPPLMCICHENCLDGAHTNVQKNEEPNKSSDGKGRSRKQSYKTEVVDLRTLLIQCALAVSSGDRGNANMLLKQIRQHSSSIGKGSQRLAYYFANALEARMAGTGSQIHTALSSKRTSATDMLKAYQLYITACPFHKIAIIFGNHTIMHISSEVETLHIVDFGILYGFQWPSLILRLSKRHGGPPKLRITGIDLPQSGFRPAERAQETGRRLAKYCKRFNVPFEYNAIAQKWETIKVEDLKIKKDEFVVVNCLLRFKTLLDETVVVNSPRDAVLKLIRKVNPSIFLQAEVNGCYNAPFFVTRFQEALFHYSSLFDMLDTIVDGEDPMRLMLEREFLGREVMNIIACEGFERVERPETYKQWQLRNMRAGFRQLPLDRLLISKFRGKLREVYHSDFMLVEDCNWMLQGWKGRIVYASSSWVPA 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1218 839 ProSiteProfiles GRAS family profile. 457 837 IPR005202 -
Dere08g1218 839 MobiDBLite consensus disorder prediction 437 458 - -
Dere08g1218 839 Pfam GRAS domain family 466 836 IPR005202 -
Dere08g1218 839 MobiDBLite consensus disorder prediction 442 458 - -
Dere08g1218 839 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 401 827 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1218 Dere-ChrDere08 16308332 16311421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1218 154 839 GRAS Transcription Factor Family AT1G07530 52.774 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere08g1218 GRAS 9.9e-111 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1218 08 16308332 16311421 Dere07g0985 07 13358245 13360524 CCT
Dere07g0986 07 13363602 13366184 Dere08g1218 08 16308332 16311421 CCT
Dere08g1218 08 16308332 16311421 Dere08g1218 08 16308332 16311421 ECH