Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1210 ATGCTCAAGGAACGAAGATGGGGTCGCAACTCGCAAGTCGTCTCTCATCCCCAATCCTCCTTCTTCCTGAGACAAAAAATGGGTATGTCCACAGTGGTCTGCATTGCGCTCCTTATCTCATTCGCGTGGATAGTTGAGGCTAGAATCCCAGGGGTCTACTCCGGGGGTCCCTGGCAAAATGCTCATGCTACCTTCTATGGAGGAGCCGATGCTTCCGGCACTATGGGTGGAGCTTGTGGTTATGGAAACCTGTACAGTCAAGGGTATGGGGTGAACACGGCGGCGCTGAGCACCGCGCTGTTCAACAATGGGCTGAGCTGCGGAGCATGCTTTGAGATAAAGTGCGCAAATGACAGACAATGGTGTCACTCGGGAAGCCCTTCCATCTTCATCACCGCCACTAACTTCTGCCCGCCCAACTATGCTCTTCCCAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTTGACCTCGCCATGCCCATGTTCCTCAAGATTGCCGAGTACCGTGCCGGTATCGTCCCCGTCGCCTATCGCCGGGTGCCATGCAGGAAGCAGGGAGGGATAAGGTTCACGATCAACGGTTTCCGATACTTCAATCTGGTACTGATTACCAACGTGGCGGGAGCAGGGGACGTCGTGCGGGCTTACGTGAAGGGATCGAGGACGGAGTGGATGCCCTTGAGCAGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTGTTGGTGGGGCAGTCCTTGTCGTTTAGGGTCTCCGGCAGCGACCGGCGCACTTCCACCTCCTGGAACATCGTTCCTTCCAATTGGCAGTTCGGTCAAACTTTCACCGGCAAGAACTTCCGCGTTTGA 855 0.5602 MLKERRWGRNSQVVSHPQSSFFLRQKMGMSTVVCIALLISFAWIVEARIPGVYSGGPWQNAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDVVRAYVKGSRTEWMPLSRNWGQNWQSNAVLVGQSLSFRVSGSDRRTSTSWNIVPSNWQFGQTFTGKNFRV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1210 284 Pfam Expansin C-terminal domain 191 268 IPR007117 -
Dere08g1210 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 76 190 IPR007112 -
Dere08g1210 284 FunFam Expansin 47 186 - -
Dere08g1210 284 CDD DPBB_EXPA_N 57 185 - -
Dere08g1210 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 200 279 IPR007117 -
Dere08g1210 284 PANTHER EXPANSIN-A15 41 282 IPR002963 GO:0009664
Dere08g1210 284 Gene3D - 190 282 IPR036749 -
Dere08g1210 284 SUPERFAMILY PHL pollen allergen 187 279 IPR036749 -
Dere08g1210 284 PRINTS Expansin/Lol pI family signature 57 72 IPR007118 GO:0005576
Dere08g1210 284 PRINTS Expansin/Lol pI family signature 173 189 IPR007118 GO:0005576
Dere08g1210 284 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Dere08g1210 284 PRINTS Expansin/Lol pI family signature 265 279 IPR007118 GO:0005576
Dere08g1210 284 PRINTS Expansin/Lol pI family signature 97 115 IPR007118 GO:0005576
Dere08g1210 284 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Dere08g1210 284 SMART dpbb_1 93 180 IPR007112 -
Dere08g1210 284 Pfam Lytic transglycolase 93 180 IPR009009 -
Dere08g1210 284 Gene3D - 45 186 IPR036908 -
Dere08g1210 284 PRINTS Expansin signature 165 178 IPR002963 GO:0009664
Dere08g1210 284 PRINTS Expansin signature 88 102 IPR002963 GO:0009664
Dere08g1210 284 PRINTS Expansin signature 148 165 IPR002963 GO:0009664
Dere08g1210 284 PRINTS Expansin signature 129 139 IPR002963 GO:0009664
Dere08g1210 284 PRINTS Expansin signature 236 257 IPR002963 GO:0009664
Dere08g1210 284 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Dere08g1210 284 PRINTS Expansin signature 189 201 IPR002963 GO:0009664
Dere08g1210 284 PRINTS Expansin signature 115 126 IPR002963 GO:0009664
Dere08g1210 284 PRINTS Expansin signature 265 281 IPR002963 GO:0009664
Dere08g1210 284 FunFam Expansin 190 282 - -
Dere08g1210 284 SUPERFAMILY Barwin-like endoglucanases 57 208 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1210 Dere-ChrDere08 16251522 16253344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1210 27 284 Expansin Gene Family AT2G39700 83.333 2.54e-164 454