Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1207 ATGAATTGCTTCCATTTTTCGAACGGAGGAGGAGAGACGCGAGAAGATGATGAATCCGTTATCTCCAGGGCTTCCAAGCTTTCCTGGGCCCGCTCTCTCAGCGTCGCTTCTTCTACCTTGGGCTCGAGGAGGTCCGAATTTGATGCCGACTCCAAGGACTTCTCCGATGCAATTGAGTTCCATAAATTCTTGTCTCAGAGGCGAGCTAATGATTTGCGCGTGTTTTCCTTCTCTGAGCTTAAATTGGCAACTCGTGGGTTCAGTAGAGCCCTTTTAATTGGAGAGGGAGGGTTTGGTTGTGTGTACAGAGGGATTGTCAGGGTACCCAGCGAGCATGGAGATGATGGCTCTTTTTCCAATATGAATGTTGCAATCAAGCAATTGAACCGTAATGGACACCAGGGGCACAAGGAATGGATTAACGAAGTGAACTTATTGGGTGTAATCAAGCATCCAAATCTTGTGAAGTTAGAGGGATATTGCGCAGAAGACGATGAAAGAGGGATTCAACGACTTTTGGTCTATGAGCTTATGCGGAATAAGAGCTTGGAAGACCATCTTTTTGCTCGAGTGCCATCAACACTCACATGGATGACAAGATTAAAAATTGCTCAAGATGCAGCCCGTGGTTTGGCATACCTGCATGAGGAAATGGATTTTCAACTTATATTTCGGGATTTCAAGACATCCAACATCCTGCTGGATGAGGACTTTAATGCGAAGCTTTCTGATTTTGGACTTGCTAGGCAAGGACCTTCAGAGGGATTTGGCCATGTTTCAACATCAGTTGTTGGCACTATAGGTTATGCTGCACCAGAGTATGTTCACACTGGTAGGTTAACTGCTAAGAGTGATGTTTGGAGCTTTGGTGTAGTTCTTTATGAGCTCATCACTGGGAGGCGAGCAGTGGAGAGAAACCTACCAAGAAATGAACAAAAGCTTTTAGAGTGGGTAAGACCTTATGTTTCTGTCCCTAGGAAGTTTCATCTTCTGGTAGACCCACGTCTTGAAGGACAATATTGCATTAAATCAGCTCAAAAACTTGCGACTTTAGCAAACAAGTGTCTCATGAAGCAGCCAAAATCCCGACCTAAAATGAGCGAAGTGGTTGAGATCCTCGGAAACATTATTAACGAGACAGTTTCTCAGTATGAATGCACACTTCAACCTGTTGTAGTGAGCGAAGAAGAAAAAGACGTGAAGTTATCTGAAGAGGATACTGAATCTGGGCCGGCTAGACAGGGGAATAATTATCTTAAGAAGGTCTTTGACTTCAGAGAAATGGTGAGCTTAAGAAACAAGTCTATTGGAAGGTTGGATTGGAAAAATTGGGCACCTGGGTTGGTAAGAACTTGGTAA 1359 0.4415 MNCFHFSNGGGETREDDESVISRASKLSWARSLSVASSTLGSRRSEFDADSKDFSDAIEFHKFLSQRRANDLRVFSFSELKLATRGFSRALLIGEGGFGCVYRGIVRVPSEHGDDGSFSNMNVAIKQLNRNGHQGHKEWINEVNLLGVIKHPNLVKLEGYCAEDDERGIQRLLVYELMRNKSLEDHLFARVPSTLTWMTRLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGFGHVSTSVVGTIGYAAPEYVHTGRLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLEWVRPYVSVPRKFHLLVDPRLEGQYCIKSAQKLATLANKCLMKQPKSRPKMSEVVEILGNIINETVSQYECTLQPVVVSEEEKDVKLSEEDTESGPARQGNNYLKKVFDFREMVSLRNKSIGRLDWKNWAPGLVRTW 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1207 452 PANTHER OS01G0588500 PROTEIN-RELATED 50 375 - -
Dere08g1207 452 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 178 386 - -
Dere08g1207 452 Gene3D Transferase(Phosphotransferase) domain 1 178 396 - -
Dere08g1207 452 ProSiteProfiles Protein kinase domain profile. 87 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1207 452 ProSitePatterns Protein kinases ATP-binding region signature. 93 126 IPR017441 GO:0005524
Dere08g1207 452 Gene3D Phosphorylase Kinase; domain 1 60 177 - -
Dere08g1207 452 FunFam Serine/threonine-protein kinase BIK1 56 177 - -
Dere08g1207 452 Pfam Protein tyrosine and serine/threonine kinase 93 373 IPR001245 GO:0004672|GO:0006468
Dere08g1207 452 CDD STKc_IRAK 93 376 - -
Dere08g1207 452 SUPERFAMILY Protein kinase-like (PK-like) 69 373 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1207 Dere-ChrDere08 16214185 16217539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1207 73 374 Glycoside Hydrolase AT3G07070 50.658 1.12e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere08g1207 PK_Tyr_Ser-Thr 5.5e-47 CL0016