LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g1206	ATGTGTGAGAGTGTGCGAGAGTACGAGGGAGCATATCTAAACATGGGGATTATACCACGTAAAGAAAACTTTTATTTACGTGAAAGAGTACAATTTCAACTTGCTCTACCTTTTGAATACTACCTCTCTCGAAAGCTTCCACACCCTTTTGGCTTCGTCTTCACTGCAGAAGGTTGGCAAGAAGGGAAAGAAGTTGGTATTGTTTCCGGCATGGGTGTTTGTTTGAGCGCCCAAATTAAAGCAGAGAGCCCATTCAACACAGGCATAAATTCAAAATATGTGAGCACTGACGGAAACGATGCTAGCAGCACAAGCAGTAAGATGTCTGCTGCATCGGTGCCTCAGACTCCACGGAGTGAGGGAGAGATCTTGCAGGCATCCAATTTGAAGAGCTTCACTGTAGCAGAACTGAAGATGGCCACCAGAAATTTTCGTCCAGATAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTGTATAAGGGGTGGATCGACGAGCATTCCTTGGCTGCTACCAAACCTGGAACTGGCATTGTTATTGCTGTCAAAAGACTTAATCAAGATGGTTTGCAAGGTCACAAGGAGTGGTTGGCTGAAGTGAATTACCTGGGACAGCTCTCTCATCCTCATCTTGTGAAATTATTTGGGTATTGTCTGGAAGACGAACATCGCCTTCTGGTCTATGAATTTATGCCTCGAGGCAGCTTGGAGAATCATTTGTTCAGAAGAGGCTCATATTTTCAACCTCTCTCCTGGAGCCTCCGTATGAAGGTTGCTCTTGGTGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAGACAAAAGTGATATACCGAGATTTCAAGACTTCAAATGTCTTGCTGGATTCAAAATATAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACTGGTGACAAGAGTCACGTCTCCACCAGAGTAATGGGAACTTATGGATATGCCGCTCCTGAATATCTAGCCACAGGTCACCTAACTACCAAGAGCGATGTCTATAGTTTTGGAGTTGTACTGGTTGAGATGTTATCAGGTCGGCGAGCAGTTGATAAGAATAGGCCATCTGGTCAGCATAATTTGGTTGAGTGGGCTAAACCCTATCTGGGAAACAAACGAAAGCTCTTTCGTGTTCTGGACATCCGCCTTGAAGGTCAGTATTCGATAGATGAGGCGCACAAGGTAGCCATGCTTGCTTTGCGATGCCTCTCTATTGAGTCCAAGATAAGGCCAAACATGGATGAGGTTGTCACAGCTTTGGAGCAACTTCAAATTCCTGGTAATGAAAATGGAAGCCATCAAAACTCTTCAGTGAATCGGTCTCGTGCTCGGAGAAGAAGTGCCGATGACTATAACAGTGGTGGCTCTCGTGTTCGTAGAAGAAGTGCTGGTGAAGCTATCAGTGAGAGTGCCACTGCAGCTTATCCCCGGCCCTCTGCTTCTCCTCTCTATGCTTGA	1476	0.4566	MCESVREYEGAYLNMGIIPRKENFYLRERVQFQLALPFEYYLSRKLPHPFGFVFTAEGWQEGKEVGIVSGMGVCLSAQIKAESPFNTGINSKYVSTDGNDASSTSSKMSAASVPQTPRSEGEILQASNLKSFTVAELKMATRNFRPDSVLGEGGFGSVYKGWIDEHSLAATKPGTGIVIAVKRLNQDGLQGHKEWLAEVNYLGQLSHPHLVKLFGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRMKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLVEMLSGRRAVDKNRPSGQHNLVEWAKPYLGNKRKLFRVLDIRLEGQYSIDEAHKVAMLALRCLSIESKIRPNMDEVVTALEQLQIPGNENGSHQNSSVNRSRARRRSADDYNSGGSRVRRRSAGEAISESATAAYPRPSASPLYA	491

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g1206	491	FunFam	Probable serine/threonine-protein kinase PBL8	230	446	-	-
	Dere08g1206	491	Gene3D	Phosphorylase Kinase; domain 1	119	229	-	-
	Dere08g1206	491	ProSitePatterns	Protein kinases ATP-binding region signature.	150	182	IPR017441	GO:0005524
	Dere08g1206	491	MobiDBLite	consensus disorder prediction	430	444	-	-
	Dere08g1206	491	Gene3D	Transferase(Phosphotransferase) domain 1	230	454	-	-
	Dere08g1206	491	ProSiteProfiles	Protein kinase domain profile.	144	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g1206	491	SUPERFAMILY	Protein kinase-like (PK-like)	120	426	IPR011009	-
	Dere08g1206	491	CDD	STKc_IRAK	150	429	-	-
	Dere08g1206	491	PANTHER	OS01G0588500 PROTEIN-RELATED	108	430	-	-
	Dere08g1206	491	MobiDBLite	consensus disorder prediction	448	462	-	-
	Dere08g1206	491	FunFam	Serine/threonine-protein kinase BIK1	111	229	-	-
	Dere08g1206	491	Pfam	Protein tyrosine and serine/threonine kinase	148	425	IPR001245	GO:0004672\|GO:0006468
	Dere08g1206	491	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	275	287	IPR008271	GO:0004672\|GO:0006468
	Dere08g1206	491	MobiDBLite	consensus disorder prediction	430	491	-	-
	Dere08g1206	491	MobiDBLite	consensus disorder prediction	97	121	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g1206	Dere-ChrDere08	16209563	16212549	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g1206	130	426	Glycoside Hydrolase	AT3G07070	52.349	5.82e-106	320

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Dere08g1206		PK_Tyr_Ser-Thr	6.7e-45	CL0016