Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1198 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCACCAGCAACAGAACTATCATCAAACAAATGGGAGTAGTGAGCTTCCACCGCTACCCCCTCAAGCCACTCAGGTTGGCTCAATCAGGCCAGGGTCGATGGCGGATCGAGCCCGGCAAGCGAAGATACCGCCGCCGGAGCCTGCTCTAAAGTGTCCTCGCTGCGAATCCACCAACACTAAATTCTGCTACTTCAACAACTACAGCCTGTCTCAACCCAGGCACTTCTGCAAGACCTGTAGGCGCTACTGGACAAGAGGCGGCGCTCTCAGGAACGTTCCGGTGGGCGGCGGATGCCGCAGAAACAAGAAGACCAAAAGAAGCCGCTCCAAGTCTCCGGCATCCACCGACAAACAGCCGATTTCCGACTCCTCAGGCGGGGCCACCACCACGGAGCTAATCGGTCAATTGCCGCCACAGCCATCTAATTTACCGTTGATGGCGTCCTTACAGAATCTGAACCGCTATGGCGTGGGAAGCATGGGCCTCAACTTGCAAGGACAGAGTGATAACATGTTTCACCATATTGGAATTGGAAGTAATATTTCAACTGGAGGAGTAGATCAGTGGCGACTACAGCAATTTCCTTTCTTGAATGGTTTTGATCCGTCAACTTCAGCTGCTTCTTCTTCATACCCATTTCAGAGCGAGCTTGGGAGTTCTAGGGTTACCCACCTGTCTCCGGTTAAACTTGAAGACAGCGGAGCCCTAAATTTGTCAAGGCCACCAGCTCTGAGTATGCCAGAAAATAATAACCAATACTATTCATGGAATCCTACTACTACTGATTTGTCAGGTCTTGCCCCTTCTTCCACCTCCCATGTCTTATAA 873 0.5052 MVFSSIPVYLDPPNWHQQQNYHQTNGSSELPPLPPQATQVGSIRPGSMADRARQAKIPPPEPALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKTKRSRSKSPASTDKQPISDSSGGATTTELIGQLPPQPSNLPLMASLQNLNRYGVGSMGLNLQGQSDNMFHHIGIGSNISTGGVDQWRLQQFPFLNGFDPSTSAASSSYPFQSELGSSRVTHLSPVKLEDSGALNLSRPPALSMPENNNQYYSWNPTTTDLSGLAPSSTSHVL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1198 290 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Dere08g1198 290 Pfam Dof domain, zinc finger 63 118 IPR003851 GO:0003677|GO:0006355
Dere08g1198 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 48 199 IPR045174 GO:0003700|GO:0006355
Dere08g1198 290 MobiDBLite consensus disorder prediction 258 272 - -
Dere08g1198 290 MobiDBLite consensus disorder prediction 128 155 - -
Dere08g1198 290 MobiDBLite consensus disorder prediction 248 272 - -
Dere08g1198 290 MobiDBLite consensus disorder prediction 108 155 - -
Dere08g1198 290 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1198 Dere-ChrDere08 16114131 16115173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1198 34 289 C2C2-Dof Transcription Factor Family AT3G55370 42.456 2.35e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere08g1198 zf-Dof 1.7e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1198 08 16114131 16115173 Dere07g0961 07 13147772 13148878 CCT