Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1195 ATGGAGAGTCATAGGTGTAAGGAGACTCGAGTAAGTTCGCGATGGAACCCTACGAAGGAGCAAATAAGCATACTGGAGAATCTGTATGAGCAGGGGGTAAGGACGCCCAGTGCCGATCAAATTCAAGATATTACTGCTATCCTCAGTGCGTATAGTCATATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCAAGATCGAGGCAGAAGCACCAGCAAGAAACTCTCGCTTATTTCAATCGCTTTCTTTATAGCTCCCGCCCCATTTTCTCTTATCCGCTTGGCCCAAATGTTATTTGCTGCCCATATCACCTGCCACAGAATGAAATCAGCTTTTATCCTCAACATTCAGAAAACTACGATGACCCGCAGGGATGGGAACACACGCAGATCCCAGAAAACTTGAAAACGCTGACTCTGTTTCCTCTTCGCCCAACTGGCATTCTGGAAGGCAAAACTAGGGCTTCACTTTCTTCTAGTGCTTCCATTACTGCTCCTTCTGATGATTCTTCTGATGTTGATGAAGATCATGGTCAGCCTGGAAATCAACCTGTCTTTGAATTTTTCCCCTTAGTTCAAGGATCTCAGACATAG 603 0.4444 MESHRCKETRVSSRWNPTKEQISILENLYEQGVRTPSADQIQDITAILSAYSHIEGKNVFYWFQNHKARSRQKHQQETLAYFNRFLYSSRPIFSYPLGPNVICCPYHLPQNEISFYPQHSENYDDPQGWEHTQIPENLKTLTLFPLRPTGILEGKTRASLSSSASITAPSDDSSDVDEDHGQPGNQPVFEFFPLVQGSQT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1195 200 SMART HOX_1 10 77 IPR001356 GO:0003677
Dere08g1195 200 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 80 IPR044555 GO:0003700|GO:0099402
Dere08g1195 200 MobiDBLite consensus disorder prediction 156 171 - -
Dere08g1195 200 ProSiteProfiles 'Homeobox' domain profile. 8 73 IPR001356 GO:0003677
Dere08g1195 200 Pfam Homeodomain 13 72 IPR001356 GO:0003677
Dere08g1195 200 MobiDBLite consensus disorder prediction 156 200 - -
Dere08g1195 200 SUPERFAMILY Homeodomain-like 10 79 IPR009057 -
Dere08g1195 200 CDD homeodomain 14 74 IPR001356 GO:0003677
Dere08g1195 200 Gene3D - 12 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1195 Dere-ChrDere08 16088075 16089204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1195 1 123 Wox Gene Family AT5G59340 58.871 4.34e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Dere08g1195 Homeodomain 3.4e-18 CL0123