Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1181 ATGTCTGCAGCTTTGGATATGAGTCTCGACGACATCATTAAGAGCAACAAAAAGTCAGGATCCGGCAACTTCAGGGGCCGTGGCCGAGGATCCGGACCCGGACCCGCTCGACGCGTGCCTAACCGTGCCGCCAATCGAGCCGCACCTTATTCCACTGCTAAGGCACCAGAGACGACATGGCAGCACGATATGTATACAGATCAGCCTGCGGCAGCATACCCTACCCAAGGTGCTCGAGCAACTTCCATAGAAACAGGAACCAAGCTCTATATATCTAATCTGGATTATGGTGTTTCAAACGACGATATTAAGGAATTATTCTCTGAAGTTGGTGACCTGAAACGACATTCAATTCATTACGATAGGAGTGGGAGGTCAAAGGGTATGGCAGAGGTTGTCTACTCACGACGAGCTGATGCTGTTGCTGCTGTGAAGAGATATAACAATGTTCAACTCGATGGGAAACCAATGAAGATAGAGATTGTTGGAACTAACATTGCTAGTCTGGCTGCAGCTCCTGCTGTGGTTCCTGCTGCAAATGGAGCTTTTGGAAATTCAAGTGGACTTTCTAGAAGTGCACAAGGGAGAGGTGGATTAGGAAGGCCCCGTGGCAGAGGAGGTAGAGGGAATGGCATTCGAAGGGGTCAAGGACGTGGAAGAGGTCGTGGGGAAAGAATATCTGCAGAAGATCTCGATGCTGATTTGGAGCAATATCATGCAGAGTTGATGCAACTAAACTGA 741 0.4885 MSAALDMSLDDIIKSNKKSGSGNFRGRGRGSGPGPARRVPNRAANRAAPYSTAKAPETTWQHDMYTDQPAAAYPTQGARATSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHSIHYDRSGRSKGMAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIASLAAAPAVVPAANGAFGNSSGLSRSAQGRGGLGRPRGRGGRGNGIRRGQGRGRGRGERISAEDLDADLEQYHAELMQLN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1181 246 MobiDBLite consensus disorder prediction 185 228 - -
Dere08g1181 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Dere08g1181 246 CDD RRM_THOC4 87 161 - -
Dere08g1181 246 MobiDBLite consensus disorder prediction 1 61 - -
Dere08g1181 246 SMART FoP_duplication_2 179 246 IPR025715 -
Dere08g1181 246 Pfam C-terminal duplication domain of Friend of PRMT1 190 240 IPR025715 -
Dere08g1181 246 Gene3D - 61 228 IPR012677 -
Dere08g1181 246 SMART rrm1_1 88 160 IPR000504 GO:0003723
Dere08g1181 246 Coils Coil 228 246 - -
Dere08g1181 246 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 244 - -
Dere08g1181 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Dere08g1181 246 SUPERFAMILY RNA-binding domain, RBD 58 164 IPR035979 GO:0003676
Dere08g1181 246 FunFam THO complex subunit 4 80 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1181 Dere-ChrDere08 15988465 15992086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1181 86 161 Eukaryotic Initiation Factors Gene Family AT1G71770 32.895 5.78e-09 54.3