Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere08g1180 | ATGTTGAGTGGCAGGGTTGGTCTCTTCCGGAGTTCTGCTATTTTACGATTGCTATGCACACGCGATTTCTCCACCAAATTATTCGTAGCAGGTCTTCTCCAACCTTTTATCTCCTTTATATCCGGTCTCTCTTATGATACTAATGAGCCCGTTCTGAGGGATGCTTTTGGGCAACACGGTGAAATCATTGAAGTTAAAGTTATATGCGATCACGTAAGTGGGAAATCAAAAGGCTATGGATTTGTGCGGTTCACTTCTGAAGCTGAAGCCAACAAAGCTCTCAGAGAAATGAACGGCCAGGTAGTAGATGGCAGAAAAATTCGCGTGTGTTTTGCACACAAAGCGTAG | 348 | 0.4397 | MLSGRVGLFRSSAILRLLCTRDFSTKLFVAGLLQPFISFISGLSYDTNEPVLRDAFGQHGEIIEVKVICDHVSGKSKGYGFVRFTSEAEANKALREMNGQVVDGRKIRVCFAHKA | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere08g1180 | 115 | FunFam | Glycine-rich RNA-binding protein 2, mitochondrial | 36 | 115 | - | - | |
| Dere08g1180 | 115 | Gene3D | - | 24 | 115 | IPR012677 | - | |
| Dere08g1180 | 115 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 114 | IPR000504 | GO:0003723 | |
| Dere08g1180 | 115 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 39 | 114 | - | - | |
| Dere08g1180 | 115 | SMART | rrm1_1 | 37 | 110 | IPR000504 | GO:0003723 | |
| Dere08g1180 | 115 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 39 | 108 | IPR000504 | GO:0003723 | |
| Dere08g1180 | 115 | SUPERFAMILY | RNA-binding domain, RBD | 39 | 113 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere08g1180 | Dere-ChrDere08 | 15987298 | 15987886 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere08g1180 | 39 | 114 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 43.421 | 6.29e-14 | 64.7 |