Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1179 ATGGTACATGGATTACTAATTTTAATCAAAGTGAAATTTGTTGGTATCTGCAGAATTTCGGATTATGTTTCTGAGGAGTTTGGTGATAGAAATTTTCGACGGACAGTTCGATTCCGAGAAATAATTGAGATGGTACAAAGAATCGGCACCAGACTCTTCGTTAGCAGATTATCATACTACACGACGAATCACCACCTTAAAGATCTGTTTTCTCCTTTTGGAATAATTACAGAAGCTAGTCTAGTAAAGGACCCAAAGACCCAAAGGCCCAAAGGGTTTGGTTTTGTCTCATACGAGTCAGAAATTGAAGCGGAGAAGGCTTTGAAGGCCATGAATGGCAGGATAATTGATGGAAGGCTGATTTTCGTTGAACCTGCAAAAGCTAGAAGACCTGAAGAAGATGGTGTCTCGTGA 414 0.401 MVHGLLILIKVKFVGICRISDYVSEEFGDRNFRRTVRFREIIEMVQRIGTRLFVSRLSYYTTNHHLKDLFSPFGIITEASLVKDPKTQRPKGFGFVSYESEIEAEKALKAMNGRIIDGRLIFVEPAKARRPEEDGVS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1179 137 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 45 131 - -
Dere08g1179 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Dere08g1179 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Dere08g1179 137 SUPERFAMILY RNA-binding domain, RBD 49 131 IPR035979 GO:0003676
Dere08g1179 137 Gene3D - 30 135 IPR012677 -
Dere08g1179 137 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 51 129 - -
Dere08g1179 137 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1179 Dere-ChrDere08 15981123 15986691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1179 49 133 Eukaryotic Initiation Factors Gene Family AT2G23350 37.647 8.24e-13 62.4