Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1177 ATGAAGAGAGGCAGAGAAGACGGTGAGATTGAGAGCTTAAACATGGTTAATTGTTTGATGTTACTCTCCAAAGTAGGTGTCACTAACAACCCTTCTTCCTCACAGTTCAAGGGTGGTGGTGATGGTTATGGGTTTAAGTGCAAGACTTGTAATAGAATTTTCTCTTCTTTTCAAGCTCTTGGAGGACACAGAGCCAGCCACAAGAAGCCGAAGCTCATGCTTTCTTCCTCACAGATACCTATGAAGCCCAACAGGATGCACCCTTGTCCCGTTTGTGGCCTTGAGTTTGGGATTGGACAAGCCCTGGGAGGCCACATGAGAAAGCATAGAGTTCATAATCACAAGAAGTTTGATTTGTGCTTGGACTTGAACTTGACACCGGTAGAAAATGATCATCTCAACCTCAGTTTAAGGAAACCCCTCGTTGATTACTCCAGAGAATGTTTTCAGATACTGCTCAAGGCTGATAAGGTCTCTCATCAAACCACGATATGCCACATTGGAGTTCCTTAA 513 0.4405 MKRGREDGEIESLNMVNCLMLLSKVGVTNNPSSSQFKGGGDGYGFKCKTCNRIFSSFQALGGHRASHKKPKLMLSSSQIPMKPNRMHPCPVCGLEFGIGQALGGHMRKHRVHNHKKFDLCLDLNLTPVENDHLNLSLRKPLVDYSRECFQILLKADKVSHQTTICHIGVP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1177 170 Gene3D Classic Zinc Finger 44 117 - -
Dere08g1177 170 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Dere08g1177 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 117 IPR013087 -
Dere08g1177 170 Pfam C2H2-type zinc finger 45 70 - -
Dere08g1177 170 Pfam C2H2-type zinc finger 87 110 - -
Dere08g1177 170 PANTHER ZINC FINGER PROTEIN ZAT5 11 134 - -
Dere08g1177 170 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Dere08g1177 170 SMART c2h2final6 87 109 IPR013087 -
Dere08g1177 170 SMART c2h2final6 45 67 IPR013087 -
Dere08g1177 170 SUPERFAMILY beta-beta-alpha zinc fingers 45 109 IPR036236 -
Dere08g1177 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1177 Dere-ChrDere08 15968643 15969645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1177 1 131 C2H2 Transcription Factor Family AT3G53600 46.795 2.79e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g1177 zf-C2H2_6 2.2e-08 CL0361