Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1175 ATGGTTCAACAGGAATTCCGAAAAGGCCCATGGACAGAACAGGAGGACCTCAAATTGGTGTCCTATGTTGGCTTGTTTGGAGAACGAAGATGGGATTTTATAGCCAAAGTTTCAGGTTTGAAGGTGGCGGGAGACAGTAATAGAACAGGTAAGAGCTGCAGGTTACGGTGGGTTAATTACCTTCATCCTGGTCTCAAACGAGGCAAGATGACACCCCAAGAAGAGCGTCTCGTGCTGGAGCTTCATGCAAAGTGGGGAAATAGATGGTCAAAAATTGCTCGGAGATTACCAGGGCGTACAGACAATGAGATTAAGAATTACTGGAGGACTTACATGAGGAAGAAGGCACAGGAGCAAAAGCGGACAGCTTCTCCTTCATCAACATCTAGCTGTCATTCTTCACTGTCATCGAATAACCACGCAGTGGATTCACATGCTTCAAAAGAGAGCGGAGAAGAAAGCTTTTATGACACAGGAGGTCCTGATATGATTGACTCAACAGAGATAAAGATAGGGGAAGAACAAGAAGGTGAAGTACAGGGTTACTCCATGGATGACATATGGAAAGATATTGCTCTGTCAGAACAGAACATTCTGTATCCAGAGCACTGCAACTTCTATTGTACTCATGATCTGCCATCTCCTTCTTGGGAGTATTCTTCAGACTCGCTGTGGGTGATAGATGAAGACGAAAGTAAGTCGTTTCTCCCTGCGAGTGATCAATTTTTTTCCTGTTACGAACAAGGGAGATCAGCATTTCTAACTGGCTAA 771 0.4449 MVQQEFRKGPWTEQEDLKLVSYVGLFGERRWDFIAKVSGLKVAGDSNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARRLPGRTDNEIKNYWRTYMRKKAQEQKRTASPSSTSSCHSSLSSNNHAVDSHASKESGEESFYDTGGPDMIDSTEIKIGEEQEGEVQGYSMDDIWKDIALSEQNILYPEHCNFYCTHDLPSPSWEYSSDSLWVIDEDESKSFLPASDQFFSCYEQGRSAFLTG 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1175 256 CDD SANT 10 61 IPR001005 -
Dere08g1175 256 CDD SANT 69 112 IPR001005 -
Dere08g1175 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 61 IPR017930 -
Dere08g1175 256 SMART sant 7 63 IPR001005 -
Dere08g1175 256 SMART sant 66 114 IPR001005 -
Dere08g1175 256 MobiDBLite consensus disorder prediction 121 144 - -
Dere08g1175 256 SUPERFAMILY Homeodomain-like 6 108 IPR009057 -
Dere08g1175 256 Gene3D - 69 133 - -
Dere08g1175 256 Gene3D - 8 66 - -
Dere08g1175 256 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 147 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dere08g1175 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere08g1175 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere08g1175 256 MobiDBLite consensus disorder prediction 115 165 - -
Dere08g1175 256 FunFam Myb transcription factor 8 66 - -
Dere08g1175 256 ProSiteProfiles Myb-like domain profile. 3 61 IPR001005 -
Dere08g1175 256 FunFam MYB transcription factor 69 135 - -
Dere08g1175 256 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dere08g1175 256 Pfam Myb-like DNA-binding domain 8 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1175 Dere-ChrDere08 15934574 15935537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1175 1 249 MYB Transcription Factor Family AT5G59780 58.203 8.20e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g1175 Myb_DNA-binding 7.6e-14 CL0123