Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1172 ATGTTCAGTTTCACCATGTCTTTAAATTCCACGGTGCCAGATGAGCCTTTGGATTGGAATGCACGAGATGTTGCTTCAATTATTCTAGTCTGCATCATCTTCCTTGTACTGAGTTACTACAGCGTAACGAAGCGTCTTTGCTGTGGTGCAAGTTCTTCTGGAAACCAAGCTCAGAGGCGACTTCCAGATGAGTCCATTCAAGATGATCGTTCTCTACAGTTCGAAAGCCATGGTTCGGAGTTCTGTGTGTTACACTCACTTCCCATGTCCAAGTTTAAGAGAAGTGAGCGAGAAGGGAAGCCAAATAACGCAGAGTGTGCAATATGCTTAGGTGAGTTTGAAGAAGGGGACTGGCTAAAACATCTTCCTAACTGCACCCATGTCTTCCATGTTTCCTGCATTGACTCATGGTTTCAGTCTCGTTCAAATTGTCCCCTCTGCAGATCTCATGTCCATCTTGACCTCAATGCTAATGCTGAATGTTCCTTATCTTCCTACACATTACTAGAAACTTTGAGTAGGGAAGATTTTTCCCAAGCAAGGACTGAACATTACCAATCCACTCATTCTGAGACCCTGCATAATTTGGCGATAAGATAG 600 0.4367 MFSFTMSLNSTVPDEPLDWNARDVASIILVCIIFLVLSYYSVTKRLCCGASSSGNQAQRRLPDESIQDDRSLQFESHGSEFCVLHSLPMSKFKRSEREGKPNNAECAICLGEFEEGDWLKHLPNCTHVFHVSCIDSWFQSRSNCPLCRSHVHLDLNANAECSLSSYTLLETLSREDFSQARTEHYQSTHSETLHNLAIR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1172 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 157 IPR013083 -
Dere08g1172 199 Pfam Ring finger domain 105 148 IPR001841 -
Dere08g1172 199 PANTHER RING-H2 FINGER PROTEIN ATL16 27 156 IPR044600 GO:0016567|GO:0016740
Dere08g1172 199 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Dere08g1172 199 SMART ring_2 106 147 IPR001841 -
Dere08g1172 199 SUPERFAMILY RING/U-box 100 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1172 Dere-ChrDere08 15887209 15887808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1172 24 151 C3H Transcription Factor Family AT1G04360 34.328 1.43e-20 86.3