Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1149 ATGAAGAAATCATTTGAGGGAGAGATGGAGCAATCAGAGAATTCGGCGAAACAATCATCGCAGAGATCTTCATTTCTGAGAGAACCTCGTGGTTCGCTGGAAGTGTTCAACCCTTCGTCCTACTCAACCGAAAGCCCATCCAACTCGCCGTTCCGATCTCAGCCCAAGTGGAAAACTTGGAACGAGCCATCATCCACCACCACCCACAAAGATGACATCACCAGCACGTCATGGATGGCCCTCAAGGACTCCGATGATCCACCCACACATAACATTTCCGCCATTCTCAGCGACCGACCTGACCAGACGCCGAAGTCCCCGGCCGCTGCGAATTTTCCCGGAGAAGTAGGCGCGGCGGCGCAGAGAGCCGCCGAGTGGGGTTTGGTGCTGAAGACTGACACGGAGACGGGGAAGCCGCAAGGAGTGGCAGTGAGAAACTCGGGAGGAGAGGAACCGAGTGCCAAGCTCGCCGGCAATTCGAGAAGGGACTCGAACAACTCGGTAAGAAGCTCCGGCGAATTGTCGGACGACGGTGGAAAAGAACTCCGTGGAATTCCGAGAGTTTCAGAGGACTTGAAGGACGCCTTGTCGGTGTTCCAGCAGACTTTCGTGGTCTCGGACGCTACGAAACCGGATTATCCGATCATGTATGCGAGTGCCGGATTCTTCAAGATGACTGGTTATACTTCCAAGGAGGTTGTAGGACGGAACTGTCGATTTTTGCAGGGAGCGGATACGGATCCAGAAGACGTGGCGAAGATCAGGGAGGCGTTGCAAGCTGGGACGAGTTACTGTGGAAGATTGCTGAATTACAAGAAGGATGGCACACCATTTTGGAACCTTCTCACTATTTCACCCATCAAGGACGACGATGGGAAAGTTCTCAAATTTATTGGAATGCTAGTGGAGGTTAGTAAGCATACGGAGGGGTCCAAGGAGAAGGTGCTACGTCCCAATGGATTGCCCGAGTCTTTGATTCGATATGATGCACGTCAGAAAGAGAAGGCTTCCTCCTCAGTATCTGAGTTGGTGCAGGCCGTGAAGCGGCCACGGGCACTCAGTGAATCAGCAAACCGTCCATTGATCAGAAAATCAGGAGGTGGTGAAGAAGAGAGAGCGGAAAGTTTGTCAAGGAGAAAATCAGAGAGTGTCGCTGCATTAAGACCAAAATCACATGGGGGACATAGAAATTCAATGGAGCGGATCAATGAGCTGCCTGAAAAGAAACAGAAAAGTTTCCGTCGTCGTTCTTTCATGGGGTTCATCAAGAAACGTCAGTCCAATGAGGAAAGCTGTGAGGACAATGAAATCATTGATGAGAGCTCTGAGAGTGAGGAAGATGAGAGGCCTGATAGTATTGATGACAAAGTAACACAAAGGGAGAAGCGAAAGGGTCTTGATCTTGCAACAACACTGGAACGTATCGAGAAGAACTTTGTCATTACAGATCCAAGACTGCCTGATAATCCTATCATCTTTGCATCTGATAGCTTCCTAGAGCTTACAGAGTACAGTCGTGAAGAAATTTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCAATTGACAACGAAACAGAAGTTACCGTGCAGCTAATTAATTACACGAAGAGTGGAAAAAAGTTCTGGAACCTGTTTCATCTGCAACCTATGCGTGATCAGAAGGGGGAAGTACAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAGCATGTGGAACCTCTGAACAACTGTATTGCAGAAGACACAGCGAAGGAAGGAGAACATTTGGTCAAACAAACTGCAGAAAATGTCAATGAGGCAGTGAGAGAACTTCCAGATGCGAATATGAAACCAGAAGATTTATGGTTAAATCATTCAAAAGTGGTCCATCCAAAACCCCATAGGAAGGATAACCCTGCTTGGAGAGCTATCCTGAAGATCCTAGAGAGTGGAGAACAGATAGGCTTAAAGCATTTTAGGCCAATAAAGCCTTTGGGATCTGGGGATACTGGCAGTGTGCATTTGGTGGAGCTATGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGCAACAAGGTGCACAGAGCTTGCACAGAGAGAGAAATCCTCGACATGTTGGACCACCCTTTTCTTCCCGCACTATATGCTTCCTTTCAGACCAAAACACATGTTTGCCTCATAACTGATTATTGTCCTGGCGGAGAACTGTTTCTGCTTCTGGACCGACAGCCTACAAAAGTTCTCAAAGAAGATGCGGCTAGGTTTTATGCTGCTGAGGTAGTAGTTGCATTGGAGTACCTCCATTGTCAAGGAATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTCCAGAGCAATGGGCACGTGTCTCTGACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGCTTTTAATTCCACCTACAAATGAAAAGAAGAAACAACATAAAGGTCAACATGCTCCAATATTTATGGCTGAACCTATGAGAGCGTCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTAGTGCCGTGGATTGGTGGGCTCTTGGTATTCTTCTATACGAAATGATGTATGGATATACACCATTCAGGGGAAAGACAAGGCAAAAAACATTTGCTAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGGTTAGTCTCCATGCGAAGCAGTTAATGTACCGATTATTGTACAGAGATCCCAAAAACCGATTGGGCTCACACGAAGGAGCAAATGATATAAAGCGTCACCCATTCTTCCGAGGTGTCAACTGGGCCCTTGTTCGTTGCATGAAACTGAGAGGAACCCTCCTGACCTGGACTCTCCTCTCTTCGGGGCAAATGAGGATGAAAAGGAAGTCAGAATTGTTGATCCTGCGGTGGAGGATCTACAGACAGATTTTTTCTAAAAGATTTGAGTATGAAGGATATATCTCAGTCATGAAACAAGTGATGAGTCGTTGA 3060 0.4618 MKKSFEGEMEQSENSAKQSSQRSSFLREPRGSLEVFNPSSYSTESPSNSPFRSQPKWKTWNEPSSTTTHKDDITSTSWMALKDSDDPPTHNISAILSDRPDQTPKSPAAANFPGEVGAAAQRAAEWGLVLKTDTETGKPQGVAVRNSGGEEPSAKLAGNSRRDSNNSVRSSGELSDDGGKELRGIPRVSEDLKDALSVFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMLVEVSKHTEGSKEKVLRPNGLPESLIRYDARQKEKASSSVSELVQAVKRPRALSESANRPLIRKSGGGEEERAESLSRRKSESVAALRPKSHGGHRNSMERINELPEKKQKSFRRRSFMGFIKKRQSNEESCEDNEIIDESSESEEDERPDSIDDKVTQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNETEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLNNCIAEDTAKEGEHLVKQTAENVNEAVRELPDANMKPEDLWLNHSKVVHPKPHRKDNPAWRAILKILESGEQIGLKHFRPIKPLGSGDTGSVHLVELCGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAARFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVSLTDFDLSCLTSCKPQLLIPPTNEKKKQHKGQHAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMMYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLHAKQLMYRLLYRDPKNRLGSHEGANDIKRHPFFRGVNWALVRCMKLRGTLLTWTLLSSGQMRMKRKSELLILRWRIYRQIFSKRFEYEGYISVMKQVMSR 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1149 1019 SUPERFAMILY PYP-like sensor domain (PAS domain) 480 579 IPR035965 -
Dere08g1149 1019 MobiDBLite consensus disorder prediction 132 184 - -
Dere08g1149 1019 SUPERFAMILY PYP-like sensor domain (PAS domain) 209 301 IPR035965 -
Dere08g1149 1019 SMART pac_2 541 583 IPR001610 -
Dere08g1149 1019 SMART pac_2 265 307 IPR001610 -
Dere08g1149 1019 Gene3D Phosphorylase Kinase; domain 1 664 748 - -
Dere08g1149 1019 ProSitePatterns Protein kinases ATP-binding region signature. 671 694 IPR017441 GO:0005524
Dere08g1149 1019 MobiDBLite consensus disorder prediction 433 450 - -
Dere08g1149 1019 ProSiteProfiles PAC domain profile. 262 316 IPR000700 -
Dere08g1149 1019 FunFam Putative LOV domain-containing protein 749 964 - -
Dere08g1149 1019 Pfam Protein kinase domain 667 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1149 1019 Gene3D Transferase(Phosphotransferase) domain 1 749 962 - -
Dere08g1149 1019 MobiDBLite consensus disorder prediction 393 411 - -
Dere08g1149 1019 CDD STKc_phototropin_like 663 964 - -
Dere08g1149 1019 CDD PAS 215 304 IPR000014 -
Dere08g1149 1019 ProSiteProfiles Protein kinase domain profile. 665 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1149 1019 FunFam LOV domain-containing protein 453 617 - -
Dere08g1149 1019 Gene3D PAS domain 202 358 - -
Dere08g1149 1019 MobiDBLite consensus disorder prediction 158 173 - -
Dere08g1149 1019 Pfam PAS domain 487 579 IPR000014 -
Dere08g1149 1019 Pfam PAS domain 209 305 IPR000014 -
Dere08g1149 1019 CDD PAS 479 579 IPR000014 -
Dere08g1149 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Dere08g1149 1019 MobiDBLite consensus disorder prediction 364 386 - -
Dere08g1149 1019 SMART serkin_6 665 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1149 1019 SUPERFAMILY Protein kinase-like (PK-like) 647 969 IPR011009 -
Dere08g1149 1019 MobiDBLite consensus disorder prediction 339 411 - -
Dere08g1149 1019 PANTHER FLIPPASE KINASE 1-RELATED 184 964 - -
Dere08g1149 1019 SMART pas_2 190 259 IPR000014 -
Dere08g1149 1019 SMART pas_2 466 535 IPR000014 -
Dere08g1149 1019 ProSiteProfiles PAS repeat profile. 464 537 IPR000014 -
Dere08g1149 1019 MobiDBLite consensus disorder prediction 1 112 - -
Dere08g1149 1019 Coils Coil 2 22 - -
Dere08g1149 1019 ProSiteProfiles PAS repeat profile. 188 259 IPR000014 -
Dere08g1149 1019 MobiDBLite consensus disorder prediction 35 82 - -
Dere08g1149 1019 NCBIfam PAS domain S-box protein 215 309 IPR000014 -
Dere08g1149 1019 NCBIfam PAS domain S-box protein 489 579 IPR000014 -
Dere08g1149 1019 ProSiteProfiles PAC domain profile. 538 592 IPR000700 -
Dere08g1149 1019 MobiDBLite consensus disorder prediction 11 27 - -
Dere08g1149 1019 MobiDBLite consensus disorder prediction 424 462 - -
Dere08g1149 1019 FunFam Putative LOV domain-containing protein 202 358 - -
Dere08g1149 1019 Gene3D PAS domain 452 617 - -
Dere08g1149 1019 FunFam LOV domain-containing protein 664 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1149 Dere-ChrDere08 15494935 15507971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1149 9 962 AGC Kinase Gene Family AT3G45780 71.211 0.0 1353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Dere08g1149 Pkinase 5.4e-63 CL0016