Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1146 ATGGGTTGCTTTTGTTTTGCGAAGAAATCAAGCAGAAAATCCCAGAGCGAGAACTATAGCCAAAGCACAAAGCCCAGCAATCTCACAGATACAGTGAAAGTTGATGTGAATGTGAATGGGACGAAGGAGGCTAATTCTAAGGATGACCAACTTTCTCTGGACGTGAAGAAATTGAATTTAACAGACAATGAAATCGCTAACAGTGGCGAGGCACAGCCGTTTACTTTTGAAGAACTTGAAGCAGCAACAGGAAATTTTAGGTCAGATTGCTTTTTGGGAGAAGGAGGGTTTGGCAAAGTTTACAAGGGGTACTTGGAGAGAATAAATCAGGTTGTGGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGAATTCGGGAATTTGTTGTTGAAGTGTTGACGCTTAGTATGGCGGACCACCCTAATCTTGTCAAATTGATTGGGTTTTGTACTGATGGAGATCAGAGACTATTGGTCTATGAGTACATGCCATTAGGATCTTTGGAGAACCATTTGCATGATCTTCGACCTGGTAGGAAACCACTTGATTGGAATACAAGAATGAGAATAGCAGCTGGAGCTGCTAAGGGCTTGGAGTATTTGCATGAGAAAATGAAGCCCCCTGTCATATACCGTGACCTTAAATGCTCAAACATTTTATTAGGTGAGGGATATCATCCCAAGTTATCTGATTTTGGCTTGGCAAAAGTGGGCCCAATTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATACGGTTACTGTGCTCCAGATTATGCTATGACGGGTCAATTGACATTCAAGTCAGATATCTACAGCTTTGGAGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAAGCGATTGATAATACAAGGCCTGCCAATGAACAAAATCTGGTTGCATGGGCAAGGCCCTTATTCAAAGACCGGAGAAAATTCTCCCAAATGGTTGACCCATTGCTTGAAGGTCATTATCCTGTTAGAGGTTTGTATCAAGCTCTAGCTATTGCTGCCATGTGTGTTCAAGAGCAACCTAACATGCGGCCTGTGATAACTGATGTGGTTACAGCATTAAGCTACCTTGCTTCCCAGAAATATGATCCCCAAATTCATCCAGTACAAACCTCCAGAAGAAGGGATGATGATCAAAGACATATTGTTAGTAATGGGTCTGACACAGACAGATCTACAGACTGA 1203 0.4248 MGCFCFAKKSSRKSQSENYSQSTKPSNLTDTVKVDVNVNGTKEANSKDDQLSLDVKKLNLTDNEIANSGEAQPFTFEELEAATGNFRSDCFLGEGGFGKVYKGYLERINQVVAIKQLDPNGLQGIREFVVEVLTLSMADHPNLVKLIGFCTDGDQRLLVYEYMPLGSLENHLHDLRPGRKPLDWNTRMRIAAGAAKGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNTRPANEQNLVAWARPLFKDRRKFSQMVDPLLEGHYPVRGLYQALAIAAMCVQEQPNMRPVITDVVTALSYLASQKYDPQIHPVQTSRRRDDDQRHIVSNGSDTDRSTD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1146 400 Pfam Protein kinase domain 91 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1146 400 CDD STKc_IRAK 92 360 - -
Dere08g1146 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Dere08g1146 400 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Dere08g1146 400 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Dere08g1146 400 MobiDBLite consensus disorder prediction 374 400 - -
Dere08g1146 400 Gene3D Transferase(Phosphotransferase) domain 1 163 385 - -
Dere08g1146 400 FunFam probable serine/threonine-protein kinase RLCKVII 58 162 - -
Dere08g1146 400 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1146 400 MobiDBLite consensus disorder prediction 371 400 - -
Dere08g1146 400 SUPERFAMILY Protein kinase-like (PK-like) 72 380 IPR011009 -
Dere08g1146 400 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1146 400 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Dere08g1146 400 PANTHER OS07G0668900 PROTEIN 6 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1146 Dere-ChrDere08 15482609 15485939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1146 1 365 Glycoside Hydrolase AT3G07070 57.104 2.04e-151 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Dere08g1146 Pkinase 2.5e-43 CL0016