Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1145 ATGTGGGTTGCTCCAATGAGCAATAATGTAGTTGGACATAGAGGTTTCATGGATCAAAATCATATGATTTCTGATTCCAATAGACTCTATAATGGAGTAGTTAATGGAGGACAAGGCTCTGGATCATCCGTGGAAGATGATGCAAGATTTAACAAGGTTACTGAAGATGGAAATAGTGGGGTGAGGGGGCTGATTCAAATCCATGAGAACTTGCAGGTATCACAACAACAACCTCAAGGGCCAGTGATAGAATGGGAGCAGTTTCTCCCCTTGAGGTCAATAAAAGTTCTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTGAGTGCTCTACTAAGAAATTGTAGTTATGAAGTCATTGCTGTTTCCAATGGTCATCAAGCATGGAAAATGTTAGAAGATCCAGGCAATCGCATTGATCTCATCCTAACAGAGGTAGCTATGCCTGTTTTATCTGGAATATCTCTTTTGTGCAAGATCGTGAGCCACAAAACTCTCAAGAATATCCCAGTAATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAGGGTGCAGTTGATTTTTTAGTGAAACCCATTCGGAGGAACGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGTCACAGTTCTAGTGGCAGTGGAAGTGAAAGTGGGACACAGACCAGAAAATCTGCAAAGTCAAGAGGTGATGATGACCTAGCAGGAAATAATAGTGACAGTAGCGATGAAAATGACATTGGAAGTAAAAGCATGAGTATTCAAGATGGAAGTGACAATGGAAGTGGAACTCAGAGTTCATGGACTAAATGTCCAGCTGAAATTGGCAGCCCTCACACAGTTTCACCTCATAAGCAATCGGTTGGTGCCCCTGATAGCACATGTGTGCAAGTGATGCATACAAAGCCTGAATATGCTAGTAGTACTTGGGTGCATGTGACAGAAAATGAGTGCAACAGACAGAGTGAACTGCTAGATAATGTTGCAATGGGGAAAGAATTGGGGATGGGAATATCTTTAAATATGCGGCTAGAATATCAACCTGAAGAGTTGTCCGCCAATCCAATGGGGAAAAGGATGAATAATCTGTCTGATGTAGATAGTAAGCAACTCAGTAAAGGACACAATAATGTCTGTGGACAACTGTTATACAACAGTGATAAAATCAGGACACAAAACGACCAGGTTTTGCATGTCATTGATGCAGTAACTGATAGAAGCAATCCACAGGCAGGAAGCAGAGAATTGAACACTAACAATAGCTTTTCCAGCATCTCACAAACTAAAGCAAGCTGTTGCCCTAAACAACATCCATCTCTTGAACTAACTTTAAAGAGGCTAGGAGGAGTGGGATATGCAAAAAATGTGGCAGGTGATGAGCGCAATGTTTTGAGATGCTCAGATCTGTCAGCATTCTCAAAATATAACACTGTTTCTGCTAATCAGGCTCAAAGAGGAAATGTTGGAAGCTGTTCTCCACCAGATAATAGCTCAGTTGTACCAAATTCAGAGACAACGCACAATCCATCTTGTTCTAATGGCACTCCTCCAAATCAGCAGTTTAATGGGAGCAGCAACATCCATGACATGGCCTCCACTAATATATATTTCAGTACCACAGGTGAAGCTTTTGAAAAGAAGCCAGAGTCTGTTACAGGAGTTGGATCTTTTAATTCTTCTGCACTCCAAGCTGTACAGAACAGTAGTATTTCCTCACCTCACAAGAAAGTTTCTGCCCAGGCAGATAATGTAAGGACGGTTAATGCACAAGTGGTAGGCTCCGAGCAAGAGTTCAATGTTGAGCACAATCATTGTCACTTTCACAATTATAATCATATTGTCCACAATACTACACTAGAACTCCAGTCAGATGATGGTATATCATCAAAATTGTTAGAAGGGCCAGTGGAAAGTAATGCAGCGAACTTCAATGTGGATGGAAGTGCTACTGAGAGTGATCACGGTAGCAATGGACAGAATGGAAGCTGTACCAACTTGACAACCAGAATGATGACAGTGGAAAGTGGTAATAAGGCAGCTGGGAGCATTGGAGCCAGTGGCATTGACAGGAAAAACAGTGGGGGGAATGGAATAGATGAAGGACGAATTGCACTAAGAGAGGCTGCCTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGACAAGAGGGTTCGATACTACAGCAGGAAAAAACTAGCAGAAATGCGGCCTCGTATCAAGGGACAATTTGTCAGACGAGTAGTGTCCGACGCTAAAGAAGAAAAAAATGCACAGAAATAA 2310 0.4165 MWVAPMSNNVVGHRGFMDQNHMISDSNRLYNGVVNGGQGSGSSVEDDARFNKVTEDGNSGVRGLIQIHENLQVSQQQPQGPVIEWEQFLPLRSIKVLLVEDDDSTRHVVSALLRNCSYEVIAVSNGHQAWKMLEDPGNRIDLILTEVAMPVLSGISLLCKIVSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESGTQTRKSAKSRGDDDLAGNNSDSSDENDIGSKSMSIQDGSDNGSGTQSSWTKCPAEIGSPHTVSPHKQSVGAPDSTCVQVMHTKPEYASSTWVHVTENECNRQSELLDNVAMGKELGMGISLNMRLEYQPEELSANPMGKRMNNLSDVDSKQLSKGHNNVCGQLLYNSDKIRTQNDQVLHVIDAVTDRSNPQAGSRELNTNNSFSSISQTKASCCPKQHPSLELTLKRLGGVGYAKNVAGDERNVLRCSDLSAFSKYNTVSANQAQRGNVGSCSPPDNSSVVPNSETTHNPSCSNGTPPNQQFNGSSNIHDMASTNIYFSTTGEAFEKKPESVTGVGSFNSSALQAVQNSSISSPHKKVSAQADNVRTVNAQVVGSEQEFNVEHNHCHFHNYNHIVHNTTLELQSDDGISSKLLEGPVESNAANFNVDGSATESDHGSNGQNGSCTNLTTRMMTVESGNKAAGSIGASGIDRKNSGGNGIDEGRIALREAALTKFRQKRKERCFDKRVRYYSRKKLAEMRPRIKGQFVRRVVSDAKEEKNAQK 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1145 769 MobiDBLite consensus disorder prediction 217 299 - -
Dere08g1145 769 Pfam CCT motif 714 756 IPR010402 GO:0005515
Dere08g1145 769 MobiDBLite consensus disorder prediction 217 231 - -
Dere08g1145 769 FunFam Two-component response regulator-like PRR37 94 254 - -
Dere08g1145 769 SMART REC_2 94 209 IPR001789 GO:0000160
Dere08g1145 769 MobiDBLite consensus disorder prediction 248 281 - -
Dere08g1145 769 Gene3D - 93 254 - -
Dere08g1145 769 MobiDBLite consensus disorder prediction 491 535 - -
Dere08g1145 769 ProSiteProfiles Response regulatory domain profile. 95 213 IPR001789 GO:0000160
Dere08g1145 769 ProSiteProfiles CCT domain profile. 714 756 IPR010402 GO:0005515
Dere08g1145 769 MobiDBLite consensus disorder prediction 651 673 - -
Dere08g1145 769 CDD psREC_PRR 96 199 - -
Dere08g1145 769 Pfam Response regulator receiver domain 96 207 IPR001789 GO:0000160
Dere08g1145 769 PANTHER TWO-COMPONENT RESPONSE REGULATOR 95 275 IPR045279 GO:0009736
Dere08g1145 769 SUPERFAMILY CheY-like 93 218 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1145 Dere-ChrDere08 15465844 15471125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1145 38 484 Response Regulator Gene Family AT5G60100 44.227 4.39e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Dere08g1145 Response_reg 2.8e-22 CL0304