Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1139 ATGTTCGATCTTAATCTGAATGCGGATTCGACTGATTCGGCACATAACGATGACTCCATCAGATTTTTTGACAAGTTTCCGGAAGCTTCCGGGAATCAAATGGCGAAATCGGGGACCTCCAATTCCTCTAACGTCAATGCTGACGGGTCCAGCAATGGAGGAGGAGATGACGATTCCTGCTCTACACGCGGCGGGGACGTCTTTACATTTAATTTCGATATTCTGAAGGAGGAAGGCGTGAAAGACATCGCAAGCAAGGAGCTATTTCTGTTGAGTGGAACAAAAAGAGTGAACGGCGAGTCCGTTAATTGGCAGGGTCAGTCTTTGTCGGCCCTTCCATCGAGGAAGAGCTGGATGAGTCTCTCCTTTGATCATCATGGTGAGAACGGAGAGATAAAGATGGTTCAGGTTCAGCAACAACCTCAACAGCAAGTGAAGAAAAGCAGGAGGGGTCCAAGGTCTCGGAGCTCGCAGTACAGAGGGGTCACCTTTTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGATACTGCTCATGCCGCTGCTAGAGCCTACGACCGAGCTGCAATCAAATTTAGGGGAGTTGATGCTGACATCAATTTCAATCTCAATGACTACGAGGAGGATCTTAAGCAGATGAAAAATCTCAGCAAGGAGGAATTCGTGCACATACTTCGTCGCCAGAGTACTGGTTTCTCGAGGGGGAGTTCAAAGTACCGAGGAGTAACACTGCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCATATGATAAGGCAGCTATCAAATGCAATGGAAGGGAGGCAGTGACAAACTTTGAATTAAGAACATACGAAGGAGAGATAAAGTCTGAGGCCATTACTGAAGGTGGCGGTCATAATCTTGACCTCAATTTGGGCATAGCAACCCCGGGCAGTGGTCCAGAAGAAAATAGGGGGCATCCTCAGTTCCAGTCTATCCCTCACAACATGCATGCAGGAAGAAGTTCAATGAAGGAGACTAATATTAATTCAGTAAATGGTGATCCATCGTTGAAAAGGGTGGTTGTTACTGAAGAGCGTCCTTCAGTATGGAATGGCATATATCCTAGTTTCTTCCCCAATGAGGAAAAGGTAGAGAGAATCAGCATAGATCCTTCTTCACAAGGACTCCCTCACTGGGCTTGGCAAACGCAAGGCCAGGTTATTGCTACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTCCCATTGGCTACCATCTTTCCAACAAAATCTGTGAACTCAATTCCCCAGAATATCTGCTTTGGTCCATCAAGTACAGCTGGCGGCAACACAACTCAACATTATTACCAGATGAAGTCCTCGCAGGCACCACCCTAG 1485 0.4694 MFDLNLNADSTDSAHNDDSIRFFDKFPEASGNQMAKSGTSNSSNVNADGSSNGGGDDDSCSTRGGDVFTFNFDILKEEGVKDIASKELFLLSGTKRVNGESVNWQGQSLSALPSRKSWMSLSFDHHGENGEIKMVQVQQQPQQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLNDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFELRTYEGEIKSEAITEGGGHNLDLNLGIATPGSGPEENRGHPQFQSIPHNMHAGRSSMKETNINSVNGDPSLKRVVVTEERPSVWNGIYPSFFPNEEKVERISIDPSSQGLPHWAWQTQGQVIATPVPPFSTAASSGFSISATFPLATIFPTKSVNSIPQNICFGPSSTAGGNTTQHYYQMKSSQAPP 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1139 494 CDD AP2 158 213 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Dere08g1139 494 MobiDBLite consensus disorder prediction 136 159 - -
Dere08g1139 494 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Dere08g1139 494 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Dere08g1139 494 Gene3D AP2/ERF domain 249 309 IPR036955 GO:0003700|GO:0006355
Dere08g1139 494 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Dere08g1139 494 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 CDD AP2 249 307 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 MobiDBLite consensus disorder prediction 32 58 - -
Dere08g1139 494 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Dere08g1139 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 125 358 - -
Dere08g1139 494 MobiDBLite consensus disorder prediction 31 59 - -
Dere08g1139 494 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1139 Dere-ChrDere08 15351504 15355074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1139 140 333 AP2-EREBP Transcription Factor Family AT4G36920 81.726 3.87e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere08g1139 AP2 2.9e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1139 08 15351504 15355074 Dere07g0892 07 12409453 12413090 CCT
Dere08g1139 08 15351504 15355074 Dere08g1139 08 15351504 15355074 ECH