Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1127 ATGCTTACTAATATACTTCAAATTGTATTTTTGTTTGTGCAGCAAATGTCTAGTCAGTCACTGGAGAACATGATAGCTTGCTCAAAAGCACAGCAAGAGAGGAAGCCAAGACCTCAGCCAGAAGAAGCACTGAAATGCCCAAGATGTGAATCCACCAACACCAAATTCTGTTACTACAACAATTACAGTCTTGCTCAGCCAAGATACTTCTGCAAGTCATGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGTGGAGGCTGCAGGAAGAACAAGAGGTCGTCATCATCAAAGAGGGCTCAAGATCAAACACTCACGACCAGCAACAACCCACTCACTACCCTCCCTCCATTATCTTATGAATCCAATGAACTCACCCTCGCATTAGCGAGGCTCCCCAAGCAATCCTGTACTACTGGGCAATTGGGGTTTGATGACCATGATCTTTCAATTTTGGGGAATCCCACAGGCACCCATTTCGATATTCTTGGCAATCCTACAAATCCAGGCTTTTTAGATGCATTACGGAGTGGATTCATGGAGACCCAGAATAATAATTTGCAGAATCTGTATTGCGGATATGGAATTGGGGACATGGGAGAGGTGGATAATAGCAATGCAGAGGTCATGCTCCCCTATGATCAAGAAATCAGTAATGCCCCCACAACTCAAGCAGTGTCGGTCACTACCATGAAGCAAGAAATAATGTGTAATGGTAGAGAACAAAGCGAAAATAAGGTGCTGTGGGGTCTCCCATGGCAGCCCAATGGAGACATAAACATGGGCGGGCTTGATTCAGGAAGAGCAACTTGGAATTATGGTCACAATTCATCTTGGCATGGTCTCCTCAATAGTCCCCTAATGTAG 882 0.4501 MLTNILQIVFLFVQQMSSQSLENMIACSKAQQERKPRPQPEEALKCPRCESTNTKFCYYNNYSLAQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSKRAQDQTLTTSNNPLTTLPPLSYESNELTLALARLPKQSCTTGQLGFDDHDLSILGNPTGTHFDILGNPTNPGFLDALRSGFMETQNNNLQNLYCGYGIGDMGEVDNSNAEVMLPYDQEISNAPTTQAVSVTTMKQEIMCNGREQSENKVLWGLPWQPNGDINMGGLDSGRATWNYGHNSSWHGLLNSPLM 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1127 293 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Dere08g1127 293 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Dere08g1127 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 187 IPR045174 GO:0003700|GO:0006355
Dere08g1127 293 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Dere08g1127 293 MobiDBLite consensus disorder prediction 89 122 - -
Dere08g1127 293 MobiDBLite consensus disorder prediction 103 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1127 Dere-ChrDere08 15139535 15140416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1127 42 293 C2C2-Dof Transcription Factor Family AT2G28510 43.772 1.99e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere08g1127 zf-Dof 9.9e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1127 08 15139535 15140416 Dere07g0879 07 12300832 12302325 CCT
Dere08g1127 08 15139535 15140416 Dere08g1127 08 15139535 15140416 ECH