Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1122 ATGGGAAAACGCCGCGCACGCAGCCAACGAATTTCAACAGTGACATCATTTTTCCAAGAGATGACGCTGTTGCTTGGCTTCTCCTTCGCTATAAATGACCCCTTCCCCTACGCTCTCTCTGTTGACGCAAACACTCCCACTTCCTCTCCTCCTCTTTCTCAATCTCCCACTAATTCTTCATCTTCCACACCACATGTTATTGCAAGTCCTTGTGCTGCTTGTAAGCTTTTGAGGCGTCGATGTGCTGAGAAATGTGTTCTGGCTCCTTATTTCCCTCCCACTGAGCCTGCCAAGTTCACCATCGCTCATCGAGTTTTCGGTGCCAGCAACATCATCAAATTCTTGCAGGAACTTCCAGAGAGTCAAAGAGCTGATGCAGTGAGCAGTATGGTGTACGAGGCAAGTGCAAGAATAAGAGACCCAATATATGGGTGTGCTGGAGCAATATGCCAGCTTCAGAAGCAAGTGAATGAGCTTCAAGCACAGCTAGCCAAGGCACAAGCCGAGCTTGTGAACATGCAATTCCAGCAGGCCAATCTGGTGGCTCTGATTTGCATGGAAATGTCACAAACTCCTCCTCCTCCTCAGGAATCTGAATCGCCACAGCATTCAGTGGATAATTTCATTTCAACTCCTCACACCTTCGCCTATCAGAACAATTTCAACTTCTTTGAGGACAACACTAGCCTGAATTCTCTCTGGGAGCCTCTTTGGACATGA 720 0.4778 MGKRRARSQRISTVTSFFQEMTLLLGFSFAINDPFPYALSVDANTPTSSPPLSQSPTNSSSSTPHVIASPCAACKLLRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPIYGCAGAICQLQKQVNELQAQLAKAQAELVNMQFQQANLVALICMEMSQTPPPPQESESPQHSVDNFISTPHTFAYQNNFNFFEDNTSLNSLWEPLWT 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1122 239 ProSiteProfiles LOB domain profile. 69 170 IPR004883 -
Dere08g1122 239 Pfam Lateral organ boundaries (LOB) domain 70 167 IPR004883 -
Dere08g1122 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 69 202 - -
Dere08g1122 239 MobiDBLite consensus disorder prediction 46 65 - -
Dere08g1122 239 Coils Coil 149 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1122 Dere-ChrDere08 15108223 15109576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1122 66 239 AS2 family AT2G28500 65.405 3.17e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere08g1122 LOB 5.1e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1122 08 15108223 15109576 Dere07g0875 07 12248152 12249649 CCT
Dere08g1122 08 15108223 15109576 Dere08g1122 08 15108223 15109576 ECH