Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1121 ATGGAGAATCGTACGCAGGACGAAGACGAACTGCAAACCCTCATTTCTGAGCTAAGCCAAGCCTTCATGATGGCTACAACCCTAGCGTCCGATTCGGACTTGGCCTTCCAACTACAAATGCAAGAAGCAGTTAATGCTTCTCTCGCTTCCCGAACCCCGGCTTCACCGTCGCCTGCCGCCGTTTTCACCGATGAAGATGACGCTGGCGGTGTTCTGGACTTGGCGCTTATGCTGGAAAACTTGCAGAGGTTCACCCTAGAGCTTAAGGACCGCGAGCAATGCCTAGCGGAGATGGCGAAAATGAGGGAAGATCTGGACCGTCGGATTTTTGATCAGGACTTCGCAGGGGACATTCTGAGAATTCCCGAGGATCAGTGGATAAAAAATGGTGACAATTACTGTAGGCCCTACAATGCTGACGGTGCATCGTCATCTTCGTCGTCGTCCGGGAGCCGTTATTTGGCCTCAGAGCTTTTCAAAGTTTATTGCAAGGGTTTGGTGAGCGAAGAATGGGTTAAAGATACGAGGGTAAAGGTGGCTGCCATTGGGGTTGCCATTTGTGATTCGAGGGATTGTCTGATTTTTGAAGTTAGGAAGCCTCTGGAAACGTTGAATGCTGGTGGTGTCTTGTTGAGTACTGAGTGTGCTGAGCTGCACGCAATGATTGAAGGCCTTGAAAGCGCTCTTAGCTTGGGATTACAAAGGCTTACCATTTTCTGCGATGATTATATGCTTTACCAATATGTTACAGGCAGAGTGCAAGCAAGCGAGCATAGTAAGTTAGGTGCGCTACTCATTCAGGTGTCTTATCTTCAAAAACAATTTGCATATTGTGAACCATCGCTTGTTATACGAAGCATTATCAGACATGCTTTTAAATCTGCAAGAGATTCAATAGTTTCCCAAATCAAATGGTCATCAGAAAAGGATAAAGGTAGAAGCTTTAAGGAGACCTGTGCTATTTGTTTTGAAGATACTGATGTTGACAAAATGTTTTCGGTGGATCACTGCTTGCATAGATATTGTTTTTCATGTATGAAGCAGCATGTGGAGGTGAAGCTGCTTAATGGAATGATGGCTAACTGCCCTCATGAAGGTTGTAGATCTGAGGTTGCTGTTGATAGCTGCAGAAAATTTTTAGCACCAGAATTGGTAGAACTCATTCATGAACGGATGAAGGAATCTGTTATCCCTGCTACAGAGAAAGTGTATTGCCCATTTCCTAGGTGTTCAGCATTGATGTCAAAGCACGAGGTCTTAAAGTACACTAAGGCTACCTCTTTTGGAGCTGATAACCATGGATACAGGAAATGCTTGAAATGTCATCAATATTTCTGTATCAATTGCAGGGTTCCCTGGCATTTCAGTATGACATGCTATGACTATAAAAATTCCAGTCTTTATCTTCATGCAGAAGATGCTAAGCTGAAGTCTCTTGCTGCCATGAAATTGTGGCGGCAGTGTGTGAAGTGCAATAACATAATTGAACTCGCTGAAGGTTGCTATCATATTATGTGCAGATGTGGGTATGAATTTTGCTACACATGTGGAGCACAGTGGAAGGACAAGAAAGCAACTTGCTCTTGTCCGCTCTGGGATGAGCGTTACATCATACGTGATCAACGTTGA 1629 0.4444 MENRTQDEDELQTLISELSQAFMMATTLASDSDLAFQLQMQEAVNASLASRTPASPSPAAVFTDEDDAGGVLDLALMLENLQRFTLELKDREQCLAEMAKMREDLDRRIFDQDFAGDILRIPEDQWIKNGDNYCRPYNADGASSSSSSSGSRYLASELFKVYCKGLVSEEWVKDTRVKVAAIGVAICDSRDCLIFEVRKPLETLNAGGVLLSTECAELHAMIEGLESALSLGLQRLTIFCDDYMLYQYVTGRVQASEHSKLGALLIQVSYLQKQFAYCEPSLVIRSIIRHAFKSARDSIVSQIKWSSEKDKGRSFKETCAICFEDTDVDKMFSVDHCLHRYCFSCMKQHVEVKLLNGMMANCPHEGCRSEVAVDSCRKFLAPELVELIHERMKESVIPATEKVYCPFPRCSALMSKHEVLKYTKATSFGADNHGYRKCLKCHQYFCINCRVPWHFSMTCYDYKNSSLYLHAEDAKLKSLAAMKLWRQCVKCNNIIELAEGCYHIMCRCGYEFCYTCGAQWKDKKATCSCPLWDERYIIRDQR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1121 542 ProSiteProfiles Zinc finger RING-type profile. 319 363 IPR001841 -
Dere08g1121 542 Gene3D - 159 303 IPR036397 GO:0003676
Dere08g1121 542 Pfam IBR domain, a half RING-finger domain 475 527 IPR002867 GO:0008270
Dere08g1121 542 Pfam IBR domain, a half RING-finger domain 391 459 IPR002867 GO:0008270
Dere08g1121 542 CDD Rcat_RBR_unk 485 520 - -
Dere08g1121 542 SUPERFAMILY RING/U-box 317 399 - -
Dere08g1121 542 FunFam RBR-type E3 ubiquitin transferase 159 302 - -
Dere08g1121 542 FunFam RBR-type E3 ubiquitin transferase 314 399 - -
Dere08g1121 542 Pfam Reverse transcriptase-like 179 296 IPR002156 GO:0003676|GO:0004523
Dere08g1121 542 CDD BRcat_RBR_unk 399 462 - -
Dere08g1121 542 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 304 529 IPR031127 GO:0004842|GO:0016567
Dere08g1121 542 SMART ibrneu5 386 459 IPR002867 GO:0008270
Dere08g1121 542 SMART ibrneu5 468 529 IPR002867 GO:0008270
Dere08g1121 542 Pfam Zinc finger, C3HC4 type (RING finger) 319 363 IPR018957 GO:0046872
Dere08g1121 542 ProSitePatterns Zinc finger RING-type signature. 337 346 IPR017907 -
Dere08g1121 542 Gene3D - 456 542 - -
Dere08g1121 542 FunFam RBR-type E3 ubiquitin transferase 457 542 - -
Dere08g1121 542 SUPERFAMILY RING/U-box 473 536 - -
Dere08g1121 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 397 IPR013083 -
Dere08g1121 542 ProSiteProfiles TRIAD supradomain profile. 315 533 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1121 Dere-ChrDere08 15095864 15098341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1121 155 518 C3H Transcription Factor Family AT2G19610 36.512 1.44e-77 248