Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1109 ATGGAAATTGATCTGAACCATGCGGTGACTGAGGTTGAAAAGAATGCATTCTGTAATGGGCACTGTGAGAAAGGTGCTTGTGCTTGTGCTTCTTGTTTCTCCTCTTCAACTTCTTCATCTTCCAATTCGCCTTCAGCTCATGTGTCTTCTTCCTATCTCGAGCTTTGGCATGCTTGTGCCGGCCCCCTCACTTCCCTCCCTAAGAAAGGAAATGTAGTAGTCTACTTTCCCCAAGGTCACCTTGAACAGCTTGCCTCTTTCTCTCCTTTCTCGCCCATGGACATGCCCACCTATGACCTTCAACCACAAATCTTTTGCAGGGTCGTCAACGTCCAGCTTCTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCAGAGTTAGCAGGGATGCATGGGGAGGGCCAAGAACTTGAGGAATTGGGAGCATATGAGGAGGAAAATGGAGGATCCCCCACAAAATCAACTCCTCACATGTTCTGCAAAACGCTTACTGCATCTGATACCAGCACCCACGGGGGGTTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCCCAAGAACTTGTTGCAAAAGACCTTCATGGAGTAGAGTGGAAATTTCGCCATATTTATAGAGGTCAGCCAAGGCGGCATCTGCTTACAACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCCGTGCTCTTTCTAAGGGGTGAAAGTGGAGAATTGAGATTGGGAATCAGGAGAGCTGCTCGACCTAGAAATGGTCTTCCTGAATCAATTGTTGGCGATCAGAATTGTTATCCCAATATCCTCTCTTCAGTGGCTAACGCTATATCCACCCAAAGCGTGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAGTTTGTTGTTCCCTACCAAAATTATGTCAAAAGCATTAAGAATCCAATTACCATTGGGACAAGGTTCAAGATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAATGGCGGTATAGTGACTGGGATGCGTGACTTGGATCCCTATAAATGGCCTAATTCAAAATGGAGGTGCTTAATGGTCAGATGGGATGAGGATATTGGTCCTAATCATCCAGATCGAATTTCTCCGTGGGAGATTGAGCCTTCTGTTTCTCTCCCTCCCTTGAGCATTCAGTCATCCCCAAGACTAAAGAAATTGCGGACAGGTCTGCAAGCTGCCACACCTAGTCACCTCATGACTGGTGGCAGTAGATTTATGGACTTTGAGGAGTCTGTAATATCGCCCAAGGTCTTGCAAGGTCAAGAAAAAACAGGTTTTGTGTCACAATATTTTGGATGTGATGCAGTAACCAACCAGCCAGATTTTGAGATGAGTCCTCCAAGTCATCCAAATCTTGCATCCGCTGGAGTAAGGAAGGCTAGTGCTGCTGAGCTTATGAGGGTTCACCCTTCTAGTTATGCAAGCTTTGCGGAAACTAATAAGTTTCTGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCTTGAAAGGAAAGGCTGATTTTAACCTTGGAGCTTGGGGTAAACCCAATGCCAGTTGCACAACTTTCAATTTTCATCAGGCATCCAAACCCAACTTTCCCTCTTTAGGATCAGAAGTCCTTCAAACTGCTTATTTTCCTTATGGTGACATCCACAGAGCTGGTCAAGGTAGCATTTTGTGCTCTAAACCTGCAAATTTCCAGAGAGATAATGTCCACACACCTTCCACTCAGGCAGAGATCATAACAAAGGAAGTTGGACGGTCAGATCTCCCAAACAAAGAGAAACTGCAGGATAGTATTTCTGCTGCTGCTTCTTTAGGGGCAAGTATAAGGATTCCAACTGATGACAATTTTGAGGGGAAGGTAAATGCCTGTAAATTATTTGGGTTTCCCTTGTCCGGGGAAGCCAACTCTCAGAATTTACAGAACTCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGACTGAGCGGCTACAATGACCTGTTGAGTGAACTAGAGCGACTATTTGGCATGGAAGGCCTTATAAAAGATCCTGATAAAGGATGGAGGGTCCTGTACACTGACAGCGAAAATGACATAATGGTTGTGGGAGATGACCCATGGCATGAGTTCTGCAACGTGGTGTCCAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACGATTGGAATGATCAGTGATGATACCCAGAGCTGTTTGGAACAGGCGCCAGTGTTAATGGAGGCTTCAAAATCTTCATCAGTGGGCCAGCCAGATTCTTCTCCAACAGAAGTTAGAGTCTAA 2403 0.4494 MEIDLNHAVTEVEKNAFCNGHCEKGACACASCFSSSTSSSSNSPSAHVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQLASFSPFSPMDMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMHGEGQELEELGAYEEENGGSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRAARPRNGLPESIVGDQNCYPNILSSVANAISTQSVFHVFYSPRASHAEFVVPYQNYVKSIKNPITIGTRFKMKFEMDESPERRCNGGIVTGMRDLDPYKWPNSKWRCLMVRWDEDIGPNHPDRISPWEIEPSVSLPPLSIQSSPRLKKLRTGLQAATPSHLMTGGSRFMDFEESVISPKVLQGQEKTGFVSQYFGCDAVTNQPDFEMSPPSHPNLASAGVRKASAAELMRVHPSSYASFAETNKFLRVLQGQEICPLRSLKGKADFNLGAWGKPNASCTTFNFHQASKPNFPSLGSEVLQTAYFPYGDIHRAGQGSILCSKPANFQRDNVHTPSTQAEIITKEVGRSDLPNKEKLQDSISAAASLGASIRIPTDDNFEGKVNACKLFGFPLSGEANSQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFGMEGLIKDPDKGWRVLYTDSENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGMISDDTQSCLEQAPVLMEASKSSSVGQPDSSPTEVRV 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1109 800 Gene3D - 330 402 - -
Dere08g1109 800 SUPERFAMILY DNA-binding pseudobarrel domain 158 276 IPR015300 -
Dere08g1109 800 FunFam Auxin response factor 164 268 - -
Dere08g1109 800 Gene3D - 164 268 IPR015300 -
Dere08g1109 800 FunFam Auxin response factor 329 402 - -
Dere08g1109 800 SMART B3_2 166 268 IPR003340 GO:0003677
Dere08g1109 800 Pfam AUX/IAA family 664 756 IPR033389 -
Dere08g1109 800 ProSiteProfiles B3 DNA-binding domain profile. 166 268 IPR003340 GO:0003677
Dere08g1109 800 Pfam Auxin response factor 292 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere08g1109 800 SUPERFAMILY CAD & PB1 domains 674 751 - -
Dere08g1109 800 CDD B3_DNA 164 266 IPR003340 GO:0003677
Dere08g1109 800 ProSiteProfiles PB1 domain profile. 672 756 IPR000270 GO:0005515
Dere08g1109 800 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Dere08g1109 800 Gene3D - 668 761 - -
Dere08g1109 800 FunFam Auxin response factor 667 761 - -
Dere08g1109 800 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 761 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1109 Dere-ChrDere08 14986267 14992710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1109 49 800 B3 DNA Binding Superfamily AT5G60450 60.870 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere08g1109 AUX_IAA 2.1e-06 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1109 08 14986267 14992710 Dere08g1109 08 14986267 14992710 ECH