Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1103 ATGATGTCTGAAGAATCCCTTTCTGCTCCTTCAACCATTACCACCTTCGTCGGCCCAAACTCAAAACCTAACCCTAATTCAAATCCAGTCAAGAAAAAAAGAAGTCTCCCCGGAACACCAGATCCAGATGCAGAAGTGATAGCTCTATCGCCCAAGTCCCTGATGGCGACGAACCGTTTCGTATGCGAAATCTGCAACAAGGGCTTCCAGAGAGACCAGAACTTGCAGCTGCACCGCCGTGGCCACAATCTTCCATGGAAGCTCCGTCAGAGAACCAACAAAGAAGTGAGGAAGAAGGTGTATGTTTGCCCCGAGAAGACCTGCGTGCACCACGATCCCTCCAGAGCCCTCGGAGACCTCACGGGGATCAAGAAACACTTCAGCCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGTCAAGTGCTCCAAGAAATACGCAGTTCAATCCGATTGGAAAGCCCATAACAAAATTTGTGGCACCAGAGAGTACAAATGTGACTGTGGCACAATTTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCTTTCTGTGACGCCTTGGCTGAAGAAAGTGCGAGAACAATAACTACAGTACCAGCAAATTTTACTAACCTGAGAAGTGATCATTTGATGAACGCGAACCCTCAAGCACCAAGAATAATCCCTCAGACATTTCCTGGGTTTCATCCAGAATTTGGGGGTTCTGAAGGAGCAATGGGGACTTTTGGTCAGCTTAATCATCATCTTAGCGTTGGAAGCAATTCGAATTGCAGCTTTCCGGATTTAGTGCAAAGGATGGACATATTTGGGACATCAACGCAGACACAATGGCTTAACCAATACCCAGAAGCAGAAGCATCAATTACAAGTGCCAACAACCTATGTGTGTCTGGAATAGTGCCACATGGACTGAAGGAAGAGCCAGAAGAAAACAAAGGAGAGTTGTCGCATAGTGTAGGTTCTTTGTACTCTAGTCATCATCAGATTCAGAACCCGCAAGGAGGAGGAGCGACTCACATGTCAGCCACTGCACTCTTACAGAAAGCAGCCCAAGTTGGATCTACAACCACCAACAATGTCAACACGTCCTCCTTCAACTCTATCAACCTCTTTGGGTTGATGGGCTCTGCAGTTTTGAACGCCTCCAGCAACACCAACGTTGATGTTCACAAAACTTTCAAGCAACCAAACAACGAAAGTATTATCAACCTCGGAGGAGGGTTTCTGTTAAATGAGACGAACTCGGGATCGTTTGTGAGCACCACCAAGAGTTTGCATTCAGGGTCCAATGAAGAGGAGCTCGGTTTAACCAGAGACTTTCTGGGTGTAGGAGGGAACTCGGTGGGGCGCAGACCCTTTTTGGAGCGAGAGTTAGCCAAGTTCAATGCAATAGCCTCAGCCTCAGTCTCAGCCTTGGACCTAAGCCAGTACGGTGCGCATCACTTGTCATGA 1452 0.478 MMSEESLSAPSTITTFVGPNSKPNPNSNPVKKKRSLPGTPDPDAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCVKCSKKYAVQSDWKAHNKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEESARTITTVPANFTNLRSDHLMNANPQAPRIIPQTFPGFHPEFGGSEGAMGTFGQLNHHLSVGSNSNCSFPDLVQRMDIFGTSTQTQWLNQYPEAEASITSANNLCVSGIVPHGLKEEPEENKGELSHSVGSLYSSHHQIQNPQGGGATHMSATALLQKAAQVGSTTTNNVNTSSFNSINLFGLMGSAVLNASSNTNVDVHKTFKQPNNESIINLGGGFLLNETNSGSFVSTTKSLHSGSNEEELGLTRDFLGVGGNSVGRRPFLERELAKFNAIASASVSALDLSQYGAHHLS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1103 483 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Dere08g1103 483 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Dere08g1103 483 Gene3D Classic Zinc Finger 114 193 - -
Dere08g1103 483 Gene3D Classic Zinc Finger 39 112 - -
Dere08g1103 483 FunFam protein indeterminate-domain 12-like 39 107 - -
Dere08g1103 483 MobiDBLite consensus disorder prediction 1 33 - -
Dere08g1103 483 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Dere08g1103 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Dere08g1103 483 SMART c2h2final6 60 82 IPR013087 -
Dere08g1103 483 SMART c2h2final6 136 156 IPR013087 -
Dere08g1103 483 SMART c2h2final6 101 131 IPR013087 -
Dere08g1103 483 MobiDBLite consensus disorder prediction 1 44 - -
Dere08g1103 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 455 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1103 Dere-ChrDere08 14934471 14936369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1103 30 444 IDZ Gene Family AT3G45260 49.531 7.46e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g1103 None None None