Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1093 ATGGCTCCCTCCAAAATGTCGAAAACAGAAACGAAAAGCAACAATGGAGAAAGCTCAAAAACAGCGAGTAAAGCCAGTAAACCTAGAAAAGAGGACTTAAAGAAGAAGAAGAATAAACTCAGCAATGGCAATGTGAAGGAGAAGGACGGTAAAGTATTGATCTTTCCGTCTTCCAGCACAGAGTTCCTCGAAGAAGCAGCGAAAGGGCATGAAATAGAAATATACAACAATGGAATCACAAATGGGCAAACAAGTGGAGCAAAACCCAAGAAAGGCAAACGAAAGCAGCAAGTTGACGATTATGGAGTTGAAGGTAAAGAAGACGCGAAAACGATTAAGCTTCCGATGAATCGTATCAAGACAATAGTGAAGGCAGAAGATCCCCATTTACGTGTTTCTGAGGAAGCCATTTGGGTTATCAGCAAAGCTACGGTTAAGTTCCTTGAACAATTTACACGGGAAGCTTATGCTTGTTCTGTTCAGGATCGAAAGAAATCTCTTGGTTACCAGCGCCTATCACATGTTGTTGGTAGTCAAAGGAGATATGACTTTCTTTCAGATTATGTTCCTAAGAAACTAAAAGCTGCGGATGCATTAAGAAAGAGAAATTCATGCAGAGATGGGGAAGGCCTGGAAATGTGA 642 0.4112 MAPSKMSKTETKSNNGESSKTASKASKPRKEDLKKKKNKLSNGNVKEKDGKVLIFPSSSTEFLEEAAKGHEIEIYNNGITNGQTSGAKPKKGKRKQQVDDYGVEGKEDAKTIKLPMNRIKTIVKAEDPHLRVSEEAIWVISKATVKFLEQFTREAYACSVQDRKKSLGYQRLSHVVGSQRRYDFLSDYVPKKLKAADALRKRNSCRDGEGLEM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1093 213 SUPERFAMILY Histone-fold 95 192 IPR009072 GO:0046982
Dere08g1093 213 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 90 204 - -
Dere08g1093 213 MobiDBLite consensus disorder prediction 1 22 - -
Dere08g1093 213 Gene3D Histone, subunit A 76 191 IPR009072 GO:0046982
Dere08g1093 213 MobiDBLite consensus disorder prediction 23 46 - -
Dere08g1093 213 MobiDBLite consensus disorder prediction 77 101 - -
Dere08g1093 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 113 176 IPR003958 -
Dere08g1093 213 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1093 Dere-ChrDere08 14880589 14882970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1093 77 172 CCAAT-HAP5 Transcription Factor Family AT1G07980 39.000 3.56e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere08g1093 CBFD_NFYB_HMF 2.4e-11 CL0012