LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g1091	ATGCAAAAGGTGAGCATCTTTCCATTACAGACTCTCATTTTGTGTGTATTGAAATCCCTGAAATCCAATAATTTTCATCTAATATATGGGACTCTTGCTGTGAAAATCATTACAGGTTCAGCAGAGAACGTAGTTATTAGATATTTAATGAATAGAATTTGTTCGGCCGAGAGTACATCGTCTATGCTCCAGATGTTGAATAAGAGTTTTACTTTTGCCAAGTCGATGGGCTGTTGTAGTTGCTTTGGGTTCATCAGAAAATCTAAACGTCAGAGTGCTGAGCTTGGTATCAATAATAATATCTCTCAGGAGCTATTGTTAGATGAAGACATCGAAGATTATGATGGCTCATATAATGGTGAGGTTACTGACACCAGCAGTGGAGATGATGGTGAAGTGCAAACGCGTGCCAACCGGTCTGAGGATATTTTGAAATTGAAGGCAGAGAATGGCATGATTTGTAGGCAATTTCCTGTTAAGGAAACTCACAAAGTTGTACGAACAGAGGATAAAAATGGGAACAAGATGATAAATGAGTATGTTCGTGAATATAAGATAGGTTCTGGTAGCTACGGGAAAGTGGTTCTATATCGAAGTTCTGTTGATGGAAAGCATTATGCAATCAAGGCCTTTCATAAGTCTCATTTACGGAAGCTACGAGTTGCACCCTCAGAGACTGCCATGACAGATGTTCTGCGTGAGGTACTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGACTCGGATCACTTTTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGACCTCTTTGTGGCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTTTCGGGATTAACGTATCTCCATGCTCATAATATTGTGCATGGGGATATTAAACCTGATAATCTGTTGGTTACTCGCCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGATAATGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTTACTGCACCAGAATGTTGTTTGGGTCTTACCTACCATGGTAAAGCTGCAGATACATGGGCAGTAGGGGTTGCTTTGTACTGTATGATACTGGGTGAATATCCATTTCTTGGAGATACACTTCAAGATACCTATGACAAAATAGTCAATAATCCTTTAGTACTCCCAGATGATTTAAACCCACAGCTGATGAACCTGCTACAAGGACTACTTTGCAAAGATCCAAGACTTAGGATGACATTGAATGATGTTGCGGAGCATAGCTGGGTTATAGGAGATCATGGGCCAATTCCTGAGTACTTGTGTTGGTGCAAACGAAAGAGCTCGGAGAGGGAAGACTTGGATAGGAGCAATCAACTTGCTTGA	1419	0.4094	MQKVSIFPLQTLILCVLKSLKSNNFHLIYGTLAVKIITGSAENVVIRYLMNRICSAESTSSMLQMLNKSFTFAKSMGCCSCFGFIRKSKRQSAELGINNNISQELLLDEDIEDYDGSYNGEVTDTSSGDDGEVQTRANRSEDILKLKAENGMICRQFPVKETHKVVRTEDKNGNKMINEYVREYKIGSGSYGKVVLYRSSVDGKHYAIKAFHKSHLRKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPDSDHFYMVLEYVEGKWVCEGSGPLCGLGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQAFEDDNDELRRSPGTPVFTAPECCLGLTYHGKAADTWAVGVALYCMILGEYPFLGDTLQDTYDKIVNNPLVLPDDLNPQLMNLLQGLLCKDPRLRMTLNDVAEHSWVIGDHGPIPEYLCWCKRKSSEREDLDRSNQLA	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g1091	472	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	139	445	-	-
	Dere08g1091	472	SUPERFAMILY	Protein kinase-like (PK-like)	176	453	IPR011009	-
	Dere08g1091	472	Gene3D	Transferase(Phosphotransferase) domain 1	281	448	-	-
	Dere08g1091	472	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	307	319	IPR008271	GO:0004672\|GO:0006468
	Dere08g1091	472	Pfam	Protein kinase domain	180	441	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g1091	472	ProSitePatterns	Protein kinases ATP-binding region signature.	186	209	IPR017441	GO:0005524
	Dere08g1091	472	FunFam	Serine/threonine-protein kinase GRIK2	170	470	-	-
	Dere08g1091	472	Gene3D	Phosphorylase Kinase; domain 1	174	276	-	-
	Dere08g1091	472	SMART	serkin_6	180	441	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g1091	472	CDD	STKc_LKB1_CaMKK	186	441	-	-
	Dere08g1091	472	ProSiteProfiles	Protein kinase domain profile.	180	441	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g1091	472	FunFam	Serine/threonine-protein kinase Ssp1	174	276	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g1091	Dere-ChrDere08	14847626	14857460	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g1091	175	448	CBL-interacting serine-threonine protein kinases	AT5G35410	31.752	2.52e-41	149

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-LKB	Dere08g1091		Pkinase	3.6e-57	CL0016