Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1087 ATGACTGGGCCGCTCGTGCCCCGTGCTTTTGATATTGGTCTCTTTTTCACTCTGGGCATCTTCGGCAGTGTAGTTTCCAGAGGGAGAAAGCATTTGGAAAAGAAAATTGGACAGATCTCACCAAAGATCAGAATCAAGGCTTTTCCATGGAGAAAGCTGAATTCCCTTCTTTCCCCACCTGAAGGCCACAAGCTAAGCCCACTGGCAGATACAATTAAAGAGTCCGCGCGCGGTGGAACTGAGACGCATGTGGGAGGTGTGGAGTGGGAGGTTTTTCAGTGTGCCAGGCGCACCGCCAAGCTGCGTCATAAATGTGAAAGCTTCGTCTTATGCTTAACCAATATTCGCTTCCTTACTTCTCAAGAACTCAACTTTTTTAAACTCTTTCCGTCCCTCTTTCTGTCTCTTCGGTTTATCTCTGTTTTTGGATTGTGGGTCTGTTTTATAGACGACAACATGAATTCTGGGGAAAAGGCCGAGAGTGGGGAACACCATGCTGCCTCGTGCAAAAGAACGGTTTCTCTTCCAGTTCCCAAGGTTGATGATCCAATGGGAATGACTGAGGAATCAACACGTGTCCGTCATTGGAAGCGACAAAATCTTCTCCTGGAAATACCCCCAAGAACATCAGAAGAGCATTCTCTTGATTTTGTTGGAATTAACATGCCAATGACACCAAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCCCCAGTTCATAATTGTCCAGGGCCTCCTGTGTCAAGAGGCAAATCATCCATTAGAAATATCTTACCAAAATTGAACTTCAGGTATAAGACATCATCAGATATTGAAAAGGCTTCTGCTTCAGCTCCCGAAAGTTCCTCTCCAGTCCCTCGAGAAAAGCTTTCAATTGCAAGATCATTGTCCCTAACCAAGATTTTTACTCCTAGGATTAAGAGAACTTCATCATTACCGGTAGATGAACTTGTTCATTCAAACTCGGAATCTGCTCACGCTGGAAGCGTTGGAGGTTCCCTATATAAAAGAGAGACTCAGGGGCAAATAGCCCGCTCTCAGTCAGTGCCTGTCAATGGTATAGATAAAAGCATAAGGAGAATGGATTCATTTTTCCGTGTCATTCCTTCCACTCCTCATGTGAAGGAAAAAGGGGAATTGTTGACCGCATCCCCAACAAAGAATACTGAAAATGATGATGCTGATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGGATTTGTTTGGTTGATTTATGTGAAGGAGGTGAGACGCTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTTTGGCACACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACGTGTGATGTATGCAAGGAGGAGGTTCAGAACCTACCTGTCACTCTCTTGAGGATCCAAAATGTTCTGAATACTGGAGCTAGCAGGTCTCAGCTGGCAGATGCAAATGGATACAGGTATGTGAATAGTTATTTTTCTTTGATAGGGATCAATTTAATGAATGAGGTTTGGCAGGAGGTACCTGTGCTTGTCATTGTCAGTATGCTTGTCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTTTCATGTGTCCTGGGTCTACTCTCCTCCATGACATCGTCGACCATGGTGAATAGCAGGTTTATCTGGATTTATGCATCTGCCCAGTTTTCTCTGGTGGTGCTTTTCGCACATATATTCTACTCATTGATTGGCATGCAAGCAATTCTGTCAATCCTTCTTGCAACATTTGCTGGGTTCGGTGTGGTGATGAGTGGGAGCTCCGTTCTGGTTGAAATTTTTAGATGGAGAAGAAGATGGCTGGCTTTATCAGAGCAGCATCGCACTCCTCATGCCGTGTCCCAAGTGCATTCAGGCCCTCCCAACGGCAGTCAAACTGTGGTGCTAAATTCACAAAACACAAGTCAGAGCTGA 2004 0.4471 MTGPLVPRAFDIGLFFTLGIFGSVVSRGRKHLEKKIGQISPKIRIKAFPWRKLNSLLSPPEGHKLSPLADTIKESARGGTETHVGGVEWEVFQCARRTAKLRHKCESFVLCLTNIRFLTSQELNFFKLFPSLFLSLRFISVFGLWVCFIDDNMNSGEKAESGEHHAASCKRTVSLPVPKVDDPMGMTEESTRVRHWKRQNLLLEIPPRTSEEHSLDFVGINMPMTPSPTPTPKRVNFLVTSRSVDAPVHNCPGPPVSRGKSSIRNILPKLNFRYKTSSDIEKASASAPESSSPVPREKLSIARSLSLTKIFTPRIKRTSSLPVDELVHSNSESAHAGSVGGSLYKRETQGQIARSQSVPVNGIDKSIRRMDSFFRVIPSTPHVKEKGELLTASPTKNTENDDADGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVQNLPVTLLRIQNVLNTGASRSQLADANGYRYVNSYFSLIGINLMNEVWQEVPVLVIVSMLVYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVNSRFIWIYASAQFSLVVLFAHIFYSLIGMQAILSILLATFAGFGVVMSGSSVLVEIFRWRRRWLALSEQHRTPHAVSQVHSGPPNGSQTVVLNSQNTSQS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1087 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 470 IPR013083 -
Dere08g1087 667 SMART ringv_2 414 463 IPR011016 GO:0008270
Dere08g1087 667 MobiDBLite consensus disorder prediction 331 357 - -
Dere08g1087 667 PANTHER OS02G0165000 PROTEIN 172 641 - -
Dere08g1087 667 MobiDBLite consensus disorder prediction 642 667 - -
Dere08g1087 667 ProSiteProfiles Zinc finger RING-CH-type profile. 407 469 IPR011016 GO:0008270
Dere08g1087 667 Pfam RING-variant domain 415 462 IPR011016 GO:0008270
Dere08g1087 667 CDD RING_CH-C4HC3_MARCH 415 463 - -
Dere08g1087 667 SUPERFAMILY RING/U-box 411 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1087 Dere-ChrDere08 14829684 14838402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1087 399 469 C3H Transcription Factor Family AT2G37950 44.444 2.94e-14 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1087 08 14829684 14838402 Dere07g0839 07 11884539 11890109 CCT
Dere08g1087 08 14829684 14838402 Dere08g1087 08 14829684 14838402 ECH