Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1079 ATGTGCCCTAGCTCTTTCCAATCTGCTCCAATGCCGCCGAAATTCGACCCCTCGCAGGTTGTCGATGTCTATGTCAGAGTCACTGGCGGTGAGGTTGGTGCTGCGAGTTCACTCGCTCCCAAGATCGGTCCACTGGGTTTGTCCCCCAAAAAGATCGGAGAAGATATTGCCAAAGAGACTGCCAAGGAGTGGAAAGGATTAAGGGTGACCGTTAAGCTTACTGTCCAAAACCGTCAGGCGAAGGTGTCGGTGGTACCTTCTGCTGCTGCGCTGGTTATCAAAGCCTTGAAAGAGCCCGAACGAGACCGGAAGAAGACCAAGAACATCAAGCACAATGGTAATATATCCCTCGATGACGTGATCGAGATCGCTAAAATTATGAGGCCCAGGTCGATGGCCAAGGACCTCAGTGGGACTGTGAAGGAGATCCTGGGCACCTGCGTCTCCGTTGGGTGCACGGTGGATGGGAAGGACCCCAAGGATTTGCAGCAGGAGATCACGGATGGGGATGTTGAAATCCCTCAGGACTGA 531 0.533 MCPSSFQSAPMPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1079 176 Gene3D - 92 174 IPR036769 -
Dere08g1079 176 FunFam 60S ribosomal protein L12 11 91 - -
Dere08g1079 176 ProSitePatterns Ribosomal protein L11 signature. 141 156 IPR020785 GO:0003735|GO:0005840|GO:0006412
Dere08g1079 176 PANTHER 60S RIBOSOMAL PROTEIN L12 11 161 IPR000911 GO:0003735|GO:0005840|GO:0006412
Dere08g1079 176 CDD Ribosomal_L11 23 154 IPR000911 GO:0003735|GO:0005840|GO:0006412
Dere08g1079 176 SUPERFAMILY Ribosomal protein L11, C-terminal domain 86 159 IPR036769 -
Dere08g1079 176 Gene3D - 6 91 IPR036796 -
Dere08g1079 176 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 8 97 IPR036796 -
Dere08g1079 176 Pfam Ribosomal protein L11, N-terminal domain 23 79 IPR020784 -
Dere08g1079 176 SMART rl11c 23 155 IPR000911 GO:0003735|GO:0005840|GO:0006412
Dere08g1079 176 Pfam Ribosomal protein L11, RNA binding domain 85 154 IPR020783 GO:0003735|GO:0005840|GO:0006412
Dere08g1079 176 Hamap 50S ribosomal protein L11 [rplK]. 19 156 IPR000911 GO:0003735|GO:0005840|GO:0006412
Dere08g1079 176 FunFam 60S ribosomal protein L12 92 174 - -
Dere08g1079 176 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1079 Dere-ChrDere08 14790284 14790879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1079 11 176 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 90.964 1.75e-109 307