Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1070 ATGAAGGAAGCTGAGAGGGGCTTGGATCCACAACTATGGCACGCGTGCGCTGGAGGTATGGTTCAGATGACTCCGGTGAACTCCAAAGTCTTTTACTTTCCTCAAGGCCACGCCGAGCACGCTCAGGCCAACCTTAATTTCTCGACCTCCTTAAGGATTCCACCGCTCATTCTTTGCCGCGTGGCATCAGTGAAATTCTTGGCAGACCCAGAAACCGATGAAGTTTATGCTAAGATAAGGTTGATTCCCATGAGAAATTCCGAGCTCGATTACGACAACGATGGGGTAATGGATGGTAATGGGTCTGAGAATTCAGAAAAGCCTGCATCTTTTGCTAAGACATTGACCCAATCTGATGCCAACAATGGTGGGGGCTTCTCTGTTCCAAGGTACTGTGCAGAAACTATCTTCCCACGTCTTGATTACTCGGCCGAACCACCGGTTCAAACCGTGTCTGCCAAGGACGTTCACGGCGAAATTTGGAAATTTAGGCATATATACAGAGGTACACCTCGTCGGCACTTACTAACAACTGGGTGGAGCACTTTCGTGAACCAGAAGAAACTTGTTGCGGGGGATTCTATTGTTTTTCTGAAGGCTGAAAATGGGGATTTATGTGTTGGGATTCGCCGAGCAAAACGGGTTGGTTTCGGCGGCCGGCTGGAGGCCCCGTCATCGGGCTGGCGTGGAGGTGCCGGAAATTGTGTTGGGCCTTGTGGAGGATTCTCTTATTTCTTGAGAGAGGGGAATAAATTCTTGCCTAATGGTTGTGAGAATTCAAGCCCTGGAAGAGGAAGAGTGAGACCTGAATCTGTGGTGGAAGCAGTGACACTGGCTGCTAGTGGTCAGGCATTTGAAGTCGTTTATTATCCTCGAGCTAGTACTCCAGAGTTTTGTATTAAGGCTGCGTCTGTGAGGGCTGCAATGAGAACTCAATGGTGCAGTGGGATGAGGTTCAAGATGGCCTTTGAAACTGAGGATTCTTCTAGAATAAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGGTTGTCGATCCCATGCGTTGGCCCAACTCCCCCTGGCGTCTTCTTCAGGTTACTTGGGATGAGCCAGAGTTGCTGAAGGATGTGAAGCGTGTTAGCCCATGGTTGGTTGAATTAGTATCGAACATGCCAGTCATTCATTTTGCACCTTTTTCTTCACCAAGGAAGAAGCTGCGGCTTCCACACCACTCGGACTTCCCCTTTGATGGTCCATTTCCAATACCAACGTTTTCAGGCAACCCCCTTGGGTCTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTCTTTCAGATCTCCACCTTAACAATAAACTGCAATTGGGGTTGCTTCCAACTAACATCCAGCAGCTCGATTTACATCCTAGGATGTCCAGTGGCAACATGACCAACCATGGTAAGAACAATAAAAGCTTGTCATGCTTGCTGACCATGGGAAATTCTTGCAAGAGTTCGGAGAAATCTGATAATGTGAAGAGACACCCATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAACTTTGTCGAAGCTTTTCTAGTGATAATTTGTCTCAGAATGTTACTGGAGAAGATTCGCCAGATGAGAAGAGGGACAAAGCAAAATGCATAACAGGTGACTCACAATCTGGCCTTTCTCAGCAGTTTTCACCTGGAAAATCTTCTAGTGTTGATAATTGTTGGCAAATAGGCTTGGATAGTGGTCATTGCAAGGTTTTCATGGAATCAGAGGATGTGGGGCGGACCCTTGACCTATCACATCTTGGTTCTTATGAAGAGCTTTACAGGAGACTGGCCAACATGTTTGGAATTGAAAGATCTGCAATGTTGCGCCATGTGCTCTACTACGATGCAACTGGTGCCGTTAAGCAAACTGGACAAGAACCCTTCAGTGACTTTATGAAAACAGCAAAGAGATTGACAATTCTGACAGATTCAGGCAGCAAAGGGTTTTAG 2025 0.4696 MKEAERGLDPQLWHACAGGMVQMTPVNSKVFYFPQGHAEHAQANLNFSTSLRIPPLILCRVASVKFLADPETDEVYAKIRLIPMRNSELDYDNDGVMDGNGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVSAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLKAENGDLCVGIRRAKRVGFGGRLEAPSSGWRGGAGNCVGPCGGFSYFLREGNKFLPNGCENSSPGRGRVRPESVVEAVTLAASGQAFEVVYYPRASTPEFCIKAASVRAAMRTQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPMRWPNSPWRLLQVTWDEPELLKDVKRVSPWLVELVSNMPVIHFAPFSSPRKKLRLPHHSDFPFDGPFPIPTFSGNPLGSSSPLCCLSDNAPAGIQGARHAQFGISLSDLHLNNKLQLGLLPTNIQQLDLHPRMSSGNMTNHGKNNKSLSCLLTMGNSCKSSEKSDNVKRHPFLLFGQPILTEQQLCRSFSSDNLSQNVTGEDSPDEKRDKAKCITGDSQSGLSQQFSPGKSSSVDNCWQIGLDSGHCKVFMESEDVGRTLDLSHLGSYEELYRRLANMFGIERSAMLRHVLYYDATGAVKQTGQEPFSDFMKTAKRLTILTDSGSKGF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1070 674 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Dere08g1070 674 MobiDBLite consensus disorder prediction 539 579 - -
Dere08g1070 674 SMART B3_2 111 213 IPR003340 GO:0003677
Dere08g1070 674 Gene3D - 589 673 - -
Dere08g1070 674 SUPERFAMILY DNA-binding pseudobarrel domain 104 213 IPR015300 -
Dere08g1070 674 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Dere08g1070 674 Gene3D - 313 385 - -
Dere08g1070 674 FunFam Auxin response factor 313 386 - -
Dere08g1070 674 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Dere08g1070 674 MobiDBLite consensus disorder prediction 562 579 - -
Dere08g1070 674 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere08g1070 674 CDD B3_DNA 110 211 IPR003340 GO:0003677
Dere08g1070 674 FunFam Auxin response factor 109 213 - -
Dere08g1070 674 Gene3D - 109 213 IPR015300 -
Dere08g1070 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1070 Dere-ChrDere08 14704178 14706983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1070 4 672 B3 DNA Binding Superfamily AT4G30080 58.480 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere08g1070 B3 5.5e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1070 08 14704178 14706983 Dere07g0817 07 11701378 11706399 CCT
Dere08g1070 08 14704178 14706983 Dere08g1070 08 14704178 14706983 ECH