Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1068 ATGTTTTCTCGGTCTCCTGTGATACATAAGAACCTTTTCCTATTCCATTTGTGTGCTAGAGTAATAATTTTCTGGATGGATCCTGCTCTAAAATTTTATGCGTTGCTGGTGCTTGTTGGATTAGTGAAAGCCTCTTTTGCAGAAAATGATTTTGGGCATTGCGAAAGAGTTGTTAGAAGTTGGGCTTCCTCTTCTCTTGATAAGGAAATTAGACATGATAAACACACACTAAGGGATCTGCTATTTTTCCTACATGTCCCTAGAACAGGAGGGCGCACATATTTTCACTGTTTCTTGAAAAAGTTGTACCCCAACTCCCTGGAATGCCCTCGTTCTTATGATAGGTTGCGATTTGATCCAAGCAAATCAAAGTGTAGGCTGTTAGCAACACATGATGATTATAGCTTGACATCCAAATTTCCAGAGGAAAAAACTTCTGTGGTTACCATACTTAGGGATCCAGTTGATCGTGTCTTTAGTACTTATGAATTTTCTATAGAGGTTGCAGCTAGATTTTTAGTGCATCCAAACTTGTCATCTGCAACACAGATGGCTGCACGCCTGCGTAAAAAGACTAAAGGAGTAAGCACACTGGATATTTGGCCATGGAAGTATCTGGTTCCATGGATGAGGGAAGACTTATTTGCTAGGAGAGATGGGAGGTATAGTAAGGGACAGCACATAACTGAGAGCAATGATTCCTATGACATGGAAGATTTTGCAATGCCATTACATGAATACATCAATCATCCCGTGGCTGAGGAAATTGTACACAATGGAGCTACATTCCAGGTTGCAGGTTTGACAAACAATTCTTATCTATCAGAATCAAGTGAAGTGCGCCATTGTGTACAGAAGCACAAAATTCTTGGAAAGTATGTGCTTAAAGTTGCAAAGAAGAGGTTGGATGATATGTTATATATTGGTCTTACTGAGGAGCACAGAGAATCTGCAACTATGTTTGCAAATGTTGTTGGTGCTCAGGTTATATCACAGATTAAAGCACCAAACTCGAGTCTGAATAATGCCGATGACATAGAACAGAGTTCATTTTCAGATTCTGAGCCTGATAACAGTGAAAATCAGAGTAGCTCATTAGACAAGGGAGCAAATGAGACTGATTCAAGTGAAAACAGAGAATCAACTGGATCAAATATGACTGTGGGAAGGCTCATGGAGGCTTATGGGAGCTGTATTTCCAATTTACGGAAGGCTCAGGCACAACGACGCATCTCGTCTTTAAAGAAAATATCTCCTGTGAACTTTTCAAAAGAGGCACGTCTTCAGGTTCCTGAAGCAGTTCTCCAGCAGATAAAATCTCTCAATGACCTTGACTTAGAGCTCTACAAATATGCAAGAGACCTTTTCGTGAAACAGGACAAAACTGTGCAGAGACTTTCTGAGGAGAGATGGGATAACATATCAAGCGTTGCCTACGGCTTCGCTCTCTGGAAGATCCTTCCTTTAGCAATCGCTTTTTCCTTCCTCCTTTTCTTGTTCCTTGTAATTGTAAATGTGAGAAGAAGAACGTGTAAGGATGATATATATTATACTTCTTGTCAAAAGCATATTCCACTTCCAACTTTGCAGTCAAATACTTCTAAAGACTCGGACTTTCTCCTCTCCTCTCCGCTGTCTCCATGTGCTGCTAATGTGTCTTCTGCTTTCTGTAACACCGTTTTCCGACACAGCCACGGCCGTCTCTCCTCACCCAGTAACGTGTTTCACTACAACCTTTTAGTCACTGAAGCAACCATGTCAGAGGACGTCACAAATATGAAGGATCCTTGGTTTTTGGACAAGAATTTTAATGGTCTATCGGATGAAATCTTTGATGATGTTATAAAGTTTTTTGATTTCCCGCTGGATGACGTGGAAACTAATATTGCTGAAGAAGAAGATTGGGATGCTCAATTCAAACGCATTGAAGAGCCATCTTTTGATGTTTTCTCAGTATCATCGTCTGAATTGTGTGTTAAAACACAGAATGACAATCCAAAACTTGGGAGGACTTTCTCTGCTTCTTGTAACGAGGTTTCCCCCATAAAACAAATGGCAGAGGCTGCTGAGCCTAATGTCTCCCTTAATAAAAAGGACCTTCTCCAGTTCCGATCCTACAGTCCAGTTTCTGTTTTTGAAAGCAGTAGTTCTTCCTGTGGTGAGAATACCAACTTTGATCTGCCTGTCATCCCGGTGAAGCGCCCTCGAGGGAGGCGCGGGCGTCTCTCAAGCTTCAGCTCCCTATTGTCAATTCCTTTCATCTCTACTTCACCGGCTTTGCTGAAATCTAGTAGGGTAGCTGCCTCTGAATCAGATATAGAAACACACCCTACAGGGAAGTCATTAAACAAAGTGAAAAGGAAGCAGAGGAAAAAGGATCTCTCCCTTCTCTCAGGTGAAATCAATATGAACAAATCCTCGTCAGGGGATCCAGCTGCCCCTAGAAAATGCATGCATTGTGAAGTGACGAAGACCCCACAATGGAGGGAGGGGCCTATGGGTCCGAAGACCCTCTGCAATGCATGTGGGGTTCGATATAGGTCCGGTCGCCTGTTCCCTGAATATCGCCCTGCGGCTAGTCCCACTTTTGTAGCATCTTTGCATTCCAACTCACACAAGAAGGTCATAGAGATGAGAAACAGCCGTCCAGGAGGCTCTTAG 2661 0.425 MFSRSPVIHKNLFLFHLCARVIIFWMDPALKFYALLVLVGLVKASFAENDFGHCERVVRSWASSSLDKEIRHDKHTLRDLLFFLHVPRTGGRTYFHCFLKKLYPNSLECPRSYDRLRFDPSKSKCRLLATHDDYSLTSKFPEEKTSVVTILRDPVDRVFSTYEFSIEVAARFLVHPNLSSATQMAARLRKKTKGVSTLDIWPWKYLVPWMREDLFARRDGRYSKGQHITESNDSYDMEDFAMPLHEYINHPVAEEIVHNGATFQVAGLTNNSYLSESSEVRHCVQKHKILGKYVLKVAKKRLDDMLYIGLTEEHRESATMFANVVGAQVISQIKAPNSSLNNADDIEQSSFSDSEPDNSENQSSSLDKGANETDSSENRESTGSNMTVGRLMEAYGSCISNLRKAQAQRRISSLKKISPVNFSKEARLQVPEAVLQQIKSLNDLDLELYKYARDLFVKQDKTVQRLSEERWDNISSVAYGFALWKILPLAIAFSFLLFLFLVIVNVRRRTCKDDIYYTSCQKHIPLPTLQSNTSKDSDFLLSSPLSPCAANVSSAFCNTVFRHSHGRLSSPSNVFHYNLLVTEATMSEDVTNMKDPWFLDKNFNGLSDEIFDDVIKFFDFPLDDVETNIAEEEDWDAQFKRIEEPSFDVFSVSSSELCVKTQNDNPKLGRTFSASCNEVSPIKQMAEAAEPNVSLNKKDLLQFRSYSPVSVFESSSSSCGENTNFDLPVIPVKRPRGRRGRLSSFSSLLSIPFISTSPALLKSSRVAASESDIETHPTGKSLNKVKRKQRKKDLSLLSGEINMNKSSSGDPAAPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKKVIEMRNSRPGGS 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1068 886 ProSitePatterns GATA-type zinc finger domain. 817 842 IPR000679 GO:0006355|GO:0043565
Dere08g1068 886 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 813 874 - -
Dere08g1068 886 CDD ZnF_GATA 816 863 IPR000679 GO:0006355|GO:0043565
Dere08g1068 886 Pfam GATA zinc finger 817 850 IPR000679 GO:0006355|GO:0043565
Dere08g1068 886 Gene3D - 808 882 IPR013088 GO:0006355|GO:0008270
Dere08g1068 886 FunFam GATA transcription factor 806 884 - -
Dere08g1068 886 ProSiteProfiles GATA-type zinc finger domain profile. 811 847 IPR000679 GO:0006355|GO:0043565
Dere08g1068 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 190 IPR027417 -
Dere08g1068 886 SMART GATA_3 811 861 IPR000679 GO:0006355|GO:0043565
Dere08g1068 886 Gene3D - 76 368 IPR027417 -
Dere08g1068 886 PANTHER HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 26 466 IPR010635 GO:0008146|GO:0016020
Dere08g1068 886 MobiDBLite consensus disorder prediction 338 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1068 Dere-ChrDere08 14684973 14696866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1068 600 879 C2C2-Gata Transcription Factor Family AT1G08010 38.908 4.38e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere08g1068 GATA 1.3e-15 CL0167