LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g1062	ATGAACTCCAAGATTTTGCTTTTCTCTTGCAATCCCGGACAAAACGCAAATAAGCTTCTGCTTCGGAAGACTTCGCAGGTGAAAACTGTGATGGTTGTGGATTATTACGAGTCTATGACACTGTTTATTGCTGTTCCTCATCCGTATGGGTTGGAAAAGATGAAGCCGCAATTCAAAGTTGCTCTTGCTTTTGTTATTTGCTTGCTCTGGATTCAGCATACATTTTGTGATGGACCTTCTGGTACATCTGGCTTAAACAAATGGATATGTAGATGTTCTTTTCATGGGAACCAGAGCTCCTCTCTTGCTAATTGTTCTACGTCATGTGATTGCCATTCAGATGCTAGAGAGAGTGAATCCTTATGGACATGCTTATGTGATCCCAATGGGTTTCCAAACGTGGAAGCAGATGGTCACAGTCCTAATTGCTTTACCGCCTGCAACTGCACCTGGGGAGCTGTCGCCATCTCTCAAGGCTCAAAGAGACACATTTCCAGCAAGATTGTGATAATTATTCTATTAATATGTGTCATTTGCACAACTGTTGCATTTCTTGCCTCCATCATATGCATTTTATGGCGAAGGGATCGATGTCCTATTCAACCACCTCTAAACTTATCAGATAAGGAAACAAGTTGCAATAGTACCACCAACTTAATTAGTCATAAGACTTCTTCAGTGCCAGAAACAAAAGCTGTTATAATTTCTTCCATTAATCAAATCTCAGGATGTTTTCAGAAGGCCTCTTTCTTGTTCGGGAGCAAAAGAGAAACTTTTCTAGGAAATATTATTCAATTTTCATTTGCAGAACTGGAAAATGCCACTGAAAACTTCTCAGCTACCAACCTGATTGGACTAGGTGGAAGTAGTTATGTATATCGTGGTCGGCTGAAGAGTGGTACTAATGTGGCAGTGAAGCGACTAAAAGCTCAAGGGGGGCCCGAAGCAGACTCTGAATTTTTAACAGAGATTGAACTACTATCAAGACTTCATCATTGTCACCTGGTGCCTTTGCTTGGATACTGCTCAGAATTGAAAGGGAAGCATGTTGAGATGTTACTAGTATTTAAGTACATGGCTTATGGTAATTTAAGGGACTGTTTAGATGGAGTATCTGGAATAAATATGGATTGGGCTACTCGTGTTACAACTGCAATAGGAGCTGCAAGGGGCTTGGAATATCTACATGAAGCAGCTGCTCCAAGAATTCTGCATAGAGATGTTAAGTCAACAAACATTCTTCTGGATGAACATTATCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTAAGAGCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGCACATTTGGTTATTTTGCACCCGAGTATGCAATTGTTGGAAGAGCCTCTCTCAAGTCAGATGTTTTCAGTTTCGGGGTGGTTCTCCTTGAGATTATCAGTGGTCGGCAGCCTATCTATAAATCTACAGGCAAAGAAGAAAGCCTTGTCATATGGGCTGCTTCTCGATTACAAGATAGTAGGCGAGTAATAACTGAGTTAGCTGATCCACGATTGAAAGGTAACTTCCCAGAAGAAGAGATGCAGATAATGGCATATTTAGCAAAGGAGTGTTTGCTGTTAGATCCTGATACTCGGCCATCCATGAGTGAAGTCGTTCAAATTCTTTCAACTATATCACCAGACAAATCTAAAAGGACAAGAAACATTCCAGTGAGCCTTTTCCAGGAACCCAAGGATTCAGAGAAGCGAAGGCAGGCTCCATCTAATAAAGTAGATATTGACCACAATCTTTGGGTTGGGAACAATAATAAAGAAGCAGATACAATTTCAGCCGACTATATGGAGAGTTTGGTCCTCGTGACTTCAAAAGCTGAGAGCTGGCATGGATCAGAAGATGAAATGGTGGACCTAACTGAGCCTCGGTTTGAATCATTTTGCATGACAAACGTTAGTTCATCTTCATAA	1971	0.4105	MNSKILLFSCNPGQNANKLLLRKTSQVKTVMVVDYYESMTLFIAVPHPYGLEKMKPQFKVALAFVICLLWIQHTFCDGPSGTSGLNKWICRCSFHGNQSSSLANCSTSCDCHSDARESESLWTCLCDPNGFPNVEADGHSPNCFTACNCTWGAVAISQGSKRHISSKIVIIILLICVICTTVAFLASIICILWRRDRCPIQPPLNLSDKETSCNSTTNLISHKTSSVPETKAVIISSINQISGCFQKASFLFGSKRETFLGNIIQFSFAELENATENFSATNLIGLGGSSYVYRGRLKSGTNVAVKRLKAQGGPEADSEFLTEIELLSRLHHCHLVPLLGYCSELKGKHVEMLLVFKYMAYGNLRDCLDGVSGINMDWATRVTTAIGAARGLEYLHEAAAPRILHRDVKSTNILLDEHYQAKITDLGMAKNLRADDLPSCSNSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLEIISGRQPIYKSTGKEESLVIWAASRLQDSRRVITELADPRLKGNFPEEEMQIMAYLAKECLLLDPDTRPSMSEVVQILSTISPDKSKRTRNIPVSLFQEPKDSEKRRQAPSNKVDIDHNLWVGNNNKEADTISADYMESLVLVTSKAESWHGSEDEMVDLTEPRFESFCMTNVSSSS	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g1062	656	CDD	STKc_IRAK	284	557	-	-
	Dere08g1062	656	SUPERFAMILY	Protein kinase-like (PK-like)	259	557	IPR011009	-
	Dere08g1062	656	Gene3D	Phosphorylase Kinase; domain 1	252	358	-	-
	Dere08g1062	656	ProSitePatterns	Protein kinases ATP-binding region signature.	284	306	IPR017441	GO:0005524
	Dere08g1062	656	ProSiteProfiles	Protein kinase domain profile.	278	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g1062	656	FunFam	receptor-like serine/threonine-protein kinase NCRK	359	569	-	-
	Dere08g1062	656	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	403	415	IPR008271	GO:0004672\|GO:0006468
	Dere08g1062	656	Pfam	Protein tyrosine and serine/threonine kinase	282	557	IPR001245	GO:0004672\|GO:0006468
	Dere08g1062	656	FunFam	receptor-like serine/threonine-protein kinase NCRK	252	358	-	-
	Dere08g1062	656	Gene3D	Transferase(Phosphotransferase) domain 1	359	577	-	-
	Dere08g1062	656	PANTHER	OS01G0750732 PROTEIN	86	576	-	-
	Dere08g1062	656	SMART	serkin_6	278	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g1062	656	MobiDBLite	consensus disorder prediction	568	591	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g1062	Dere-ChrDere08	14608833	14613671	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g1062	54	652	Receptor kinase-like Gene Family	AT2G28250	54.380	0.0	593

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XVI	Dere08g1062		PK_Tyr_Ser-Thr	1.1e-42	CL0016