Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1055 ATGAGCTATCTTAGACCAGAATCGCATGTAGCACAACAGATTCGGCGTGACAAGTTGAGAATCCAGGATAGTACCCAGCAATTACAAGATTTCCCTACTAATATTGAACAGTTTTCTTTACACCGTAGCTTAAACTCGGATCTTCTGCAAGTTCGAAATGTTAGAAATGCAAACATGCTTTATGAACCAGCTTTTTATTCGTCAGAAATGGTCAATCTTTCAACACCTTCGAATCCTTTATCTGCTGCAGACGAACCCAAACCTAGTAGACTAATGATGCCTCACTATGCTTCGTTTCCCCATTCATCTATATCTGATCCAGCACCATCAGTCGAACCACGTGATCACTTGGGTTGTGATTGGATGATTAATTATGGAAGTAGTTCTGTGGTTAATGAAACCAATAATCCCAACTCTAATATTGCTACTGAACTTAGTAATAACAATGTGCCTGTGTATCAGCACTTGTCGAAGCCTAGGTACAACGAACTCTTCCGAAGGCAATTAGGGGAAATGCATCAACCTTCTCCTCCTCCACTTTTTCAGAATACTTTGCAGGATATCGTCAAGTCAGCTTCTATCAGTGCCCAGGGGTCTGATCATATGGCTTCAATGATGCAGCAATCAGGCAATGGCATTTGGATGGAAAATCAAAATCAATCAAATCAGTTTCATTTCGGAAATACTAACTTGAGTGATTCCATTAATCCTCAGGGATTATCTTTATCACTTTCATCAAATCCACAGTCCAAGATTTCTCTCTCTGGGTTTCCGTTTGGAGATGGGTGTGGATCCGACGAACTTCAATCACGATGTGGAAAATCTACAAAATCTATTACGAAGCCCTCCTCCATAGTTACTAAAGACTCTGGGCAATCACTTCAAGACCTTGTGGGAGTAGCTTCAAACACTAGTGGTTATCGAAGTAATGTGGGCCCACTTGGGCCTTTCACTGGATATGCTACAATTTTGAAGAGTTCGAGATTCCTAAAGCCAGCCCAAGAGTTGTTGGATGAGTTTTGTAGTCTGTGTGGTTCTAACATTATAAGAGCATGCGATGGTTCAGAGATCTCGAGGGTGTCTGAAGGAGTCAGTGCTTCTACTTCTGCTGCTGAAGCTGACGTTAATGCAACTGAAAGTGGGGTCTGTGCAAAAGATAGTATTGATAATGCATGTGCTGCTTCCTGTTCTATTTTGTATAATACTAAGGAAAATAACGGCGATGGTGGAGCAAGAGGAAGCTTTGGTTATTCTCCTCGGCCGGAGTATCAACAGAAAAAGGCGAAGCTCCTTTACATGCAAGATGAGGTTACAAGAAAGTACAGGCAATATAATCAACAAATGCAAATGGTTGTTTCATCTTTCGAGTCAGTTGCAGGTCTGAGTTCTGCTACACCGTACATCGCGATGGCTCTCAAGTCGGTTACAAGACACTTCAGGTGCCTAAAAAATGCTATCTTTGATCAGATCAAGCATATAAGGGATGTGCTGGGGGAGGATTTGTCAGGATCCACTTCTGGTACAAGTAGTAAACTTGACACCGATATGGGAAGACCAAGGTATATGGACCAAAGCTTTCAAAGGAGCAAAACTGCCTTTCTTGAACCTCAACAAGTGTGGAGGCCCCAGAGAGGCTTGCCAGAACGTGCCGTGGCAATTCTTAAAGCTTGGTTATTTGAGCATTTCCTTCACCCGTACCCCACAGACACTGATAAACACATGTTGGCTACTCAAACAGGTCTATCCCGGAACCAGGTATCAAATTGGTTTATAAATGCTCGAGTACGTGTGTGGAAGCCAATGGTTGAGGAAATTCACAATCTTGAAACAAAAGGCTCAATGGGTGGCAATCCGAACGAGGTAACCTCTGGTGCCGAGGGTAGCAATCAACAAGCTGTAGTTGGAGAACCTCTAAACAAGTTCGGGAAACTCGGAGATGCAATTCCTGGGAAGCAATTCCAGTGTTTGGAAATGAGTTCCTTAGGTGGGAATTCGGAGGGAGAGGGGTTTATTGGTGCAGAACAATGGAATCAAGAGAAGCGATCTAAATTGGAATGTCAGATTACACCAAGCATGGATGGGACATTAATGGGTTTTGTACCATACAGGCGTGGTGCTGATGTTGGGGGACTTGGGTCCGTGTCGTTAACGTTGGGTCTTAGACATGGCGTTGAAGGTGTACAACACCAGCAGCAACAACAATTGCAACAGGAGGACCAGCTTAGACGTCACTTTGGAGAGCATATGATCCATGACTTTGTGGGCTGA 2268 0.4347 MSYLRPESHVAQQIRRDKLRIQDSTQQLQDFPTNIEQFSLHRSLNSDLLQVRNVRNANMLYEPAFYSSEMVNLSTPSNPLSAADEPKPSRLMMPHYASFPHSSISDPAPSVEPRDHLGCDWMINYGSSSVVNETNNPNSNIATELSNNNVPVYQHLSKPRYNELFRRQLGEMHQPSPPPLFQNTLQDIVKSASISAQGSDHMASMMQQSGNGIWMENQNQSNQFHFGNTNLSDSINPQGLSLSLSSNPQSKISLSGFPFGDGCGSDELQSRCGKSTKSITKPSSIVTKDSGQSLQDLVGVASNTSGYRSNVGPLGPFTGYATILKSSRFLKPAQELLDEFCSLCGSNIIRACDGSEISRVSEGVSASTSAAEADVNATESGVCAKDSIDNACAASCSILYNTKENNGDGGARGSFGYSPRPEYQQKKAKLLYMQDEVTRKYRQYNQQMQMVVSSFESVAGLSSATPYIAMALKSVTRHFRCLKNAIFDQIKHIRDVLGEDLSGSTSGTSSKLDTDMGRPRYMDQSFQRSKTAFLEPQQVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHNLETKGSMGGNPNEVTSGAEGSNQQAVVGEPLNKFGKLGDAIPGKQFQCLEMSSLGGNSEGEGFIGAEQWNQEKRSKLECQITPSMDGTLMGFVPYRRGADVGGLGSVSLTLGLRHGVEGVQHQQQQQLQQEDQLRRHFGEHMIHDFVG 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1055 755 Pfam Associated with HOX 323 486 IPR006563 -
Dere08g1055 755 FunFam BEL1-like homeodomain protein 9 543 605 - -
Dere08g1055 755 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 212 623 - -
Dere08g1055 755 SUPERFAMILY Homeodomain-like 542 607 IPR009057 -
Dere08g1055 755 Pfam Homeobox KN domain 557 596 IPR008422 GO:0003677|GO:0006355
Dere08g1055 755 SMART prehox3 318 488 IPR006563 -
Dere08g1055 755 SMART HOX_1 540 604 IPR001356 GO:0003677
Dere08g1055 755 CDD homeodomain 540 601 IPR001356 GO:0003677
Dere08g1055 755 ProSiteProfiles 'Homeobox' domain profile. 537 600 IPR001356 GO:0003677
Dere08g1055 755 Gene3D - 543 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1055 Dere-ChrDere08 14504427 14509793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1055 235 610 Homeobox Transcription Factor Family AT5G02030 41.026 2.10e-72 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere08g1055 POX 1.9e-41 No_clan