Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1032 ATGATGAGTGAACCGAAGACACCGCTTCTGAGAAATTTGGTGAAACGCAAGCGAGTTTCACAAAGCTGGTCTGAATCTAACTTGTTCTTTTTCCCTCTTATTTCGTCTCCGATCTCTTTCTCACTCCTCGCTTCTCGAAGGTTAAGGATGGTGTCGGACGCGAGTAAGAAGAAGGCAGCACAGAAGAAGGCTGCTGCTGCTGCTAAGAGGGGAGGGAAGGCGCCTGCTGCTGCTGCTTCATCAAAGGCGGCGGCGTCGTCGGAGACTCTGAAGGCTGCCGATAAGCTTGCTAATGGAGTTGGGAATATCCAAATATCCGATCGGACATGTACCGGCGTCCTCTGCTCTCATCCTCTTTCGAGGGATATTCGGATAGAGTCTCTATCAGTTACTTTCCATGGACATGATCTCATAGTTGATTCTGAATTGGAGCTAAACTATGGAAGACGCTATGGTCTGCTTGGATTAAATGGTTGTGGAAAATCTACTCTCCTTACAGCAATAGGTTGTCGGGAGCTACCAATTCCAGAGCACATGGATATTTATCACCTTACTCGAGAAATTGAAGCTTCTGACATGTCTGCATTGGGGGCTGTCATAAGTTGCGATGAAGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGTTTTGGCAGCACAGGAAGATGGAGGTGGTGAAAGTCTTGAACGTATTTATGAACGGTTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCTGCAGAAATTTTATACGGCCTCGGTTTTAACAAGCAGATGCAGGCAAAGAAGACCCGTGATTTTTCAGGCGGTTGGAGAATGAGGATAGCTTTAGCACGAGCTCTATTTATGAACCCAACTATTCTCTTACTTGATGAACCGACTAATCACCTAGATTTGGAAGCATGTGTATGGCTGGAGGAAAATTTGAAAAAGTTTGACCGCATTCTGGTTGTGGTTTCGCACTCCCAGGATTTTCTTAATGGTGTCTGCACAAACATCATCCACATGCAAAACAGGAAGCTGAAGCTTTATACTGGTAACTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAAAACCAGATGAAGCAGTACAAGTGGGAACAGGAGCAGATTGCCTCGATGAAGGAATATATTGCCCGATTTGGGCATGGATCAGCAAAATTAGCTCGCCAGGCACAGAGTAAAGAGAAGACACTGGCAAAAATGGAACGGGGTGGACTTACTGAGAAGGTTGTCAAAGACAAAGTTTTGGTATTCCGCTTTGTTGACGTTGGAAAGCTCCCTCCTCCTGTTCTTCAGTTTGTTGAGGTGACTTTTGGTTACACTCCAGATAATCTCATCTACAAAAACCTTGACTTTGGGGTGGACTTAGACTCTAGGATTGCATTAGTTGGACCGAATGGGGCTGGGAAGAGTACATTACTGAAGCTAATGACTGGGGATCTAGTTCCTATTGATGGCATGGTCCGCCGGCATAACCACCTTCGCATTGCACAATTTCATCAGCACTTGGCTGAAAAGCTTGACTTGGAGATGTCTGCCCTCCAGTTTATGATAAAAGAGTACCCTGGAAATGAGGAAGAGAAAATGAGGGCAGCTATTGGGAAGTTTGGACTGTCCGGTAAAGCCCAGGTGATGCCCATGAAAAATTTATCTGACGGGCAGAGGAGCCGTGTGATTTTTGCTTGGTTAGCTTGGAGGCAGCCTCATTTGCTGCTTTTGGATGAGCCAACTAACCATTTGGATATTGAGACAATCGACTCATTGGCTGAGGCACTGAACGAATGGGATGGTGGTTTGGTGCTTGTCAGCCATGATTTCAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCGGATCAAACTGTGACCAGATGGGAGGGTGACATTATGGACTTCAAGGAACATCTAAGGGCTAAGGCAGGTTTATCTGAGTGA 1950 0.4585 MMSEPKTPLLRNLVKRKRVSQSWSESNLFFFPLISSPISFSLLASRRLRMVSDASKKKAAQKKAAAAAKRGGKAPAAAASSKAAASSETLKAADKLANGVGNIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLTREIEASDMSALGAVISCDEERLRLEKEAEVLAAQEDGGGESLERIYERLEAIDASTAEKRAAEILYGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPIDGMVRRHNHLRIAQFHQHLAEKLDLEMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKEHLRAKAGLSE 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1032 649 Pfam ABC transporter 334 410 IPR032781 -
Dere08g1032 649 FunFam Abc transporter f family member 1 123 387 - -
Dere08g1032 649 CDD ABCF_EF-3 434 626 - -
Dere08g1032 649 Pfam ABC transporter 450 581 IPR003439 GO:0005524
Dere08g1032 649 CDD ABCF_EF-3 123 340 - -
Dere08g1032 649 Pfam ABC transporter 141 295 IPR003439 GO:0005524
Dere08g1032 649 Gene3D - 123 387 IPR027417 -
Dere08g1032 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 367 IPR027417 -
Dere08g1032 649 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 434 649 IPR003439 GO:0005524
Dere08g1032 649 Coils Coil 341 361 - -
Dere08g1032 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 628 IPR027417 -
Dere08g1032 649 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 123 363 IPR003439 GO:0005524
Dere08g1032 649 Gene3D - 401 647 IPR027417 -
Dere08g1032 649 SMART AAA_5 459 647 IPR003593 GO:0016887
Dere08g1032 649 SMART AAA_5 147 349 IPR003593 GO:0016887
Dere08g1032 649 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 64 644 - -
Dere08g1032 649 FunFam ATP-binding cassette sub-family F member 3 394 649 - -
Dere08g1032 649 ProSitePatterns ABC transporters family signature. 267 281 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1032 Dere-ChrDere08 14300702 14304683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1032 254 321 Calmodulin-binding Proteins AT2G36910 41.429 7.63e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1032 08 14300702 14304683 Dere08g1032 08 14300702 14304683 ECH