Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1028 ATGGGAAGAGGTCCTTGTTGTGACAAGGCAAATGTGAAGAAGGGAACGTGGTCACCAGATGAGGACGCAAAGCTCAAAGAGTACATTGAGAAGCATGGGACTGGAGGCAACTGGATTGCTCTTCCTCACAAAGCTGGACAGACAATGATATCAAGAACTACTGGAACACCAAGCTCAAGAAAAAGCTCATGTGTCGGCTTCCTCCTAATCTTCAGAGAAAACCTCCATTTCTATCCTCCCATCAAAACTCACCGCTTCCTTCTTCTCAGTCACTCTCATAATCAGCGTACACAGATTCCAGCTCTCTATCTTCCACAAGCCTTGATCCCGCTTATGTCCCTTCAACTTATAATAGCACAGCCTATTTCCCTTGTTTCCAGAGCGTCACCGGTGAGTGGTAGTGCCACGCAACATTACGGTATGAGAGACGATCTGATCATGTTTGGAAGTGAAGGAAGTAGCAGTTCTTCTGATGCGAACTCTAGTCAGGTCAGCCAAAGCAGAGAGATCAAGCAAGATGATATTATGGGTATTCAGAACTATATGTCCAATGGGTATAACGGACAAAGCAATAAGTTTCTGCTTAGTAACGGCAGCAATAATAAGCAGTGGACAGAAAAGCCAAACGGGTGTTTTGGGGAAAACCTATTGGATAATTACGATATTAATGACATTAAGCAACTGATAAGTAGTAGTAGTAGCGGAAGCGATGATGGCTATAGTGGCTACGACTTCGGTATTGACGAATACATGACACGAGAGAAGTGCATGTACTACTGGTGA 783 0.4419 MGRGPCCDKANVKKGTWSPDEDAKLKEYIEKHGTGGNWIALPHKAGQTMISRTTGTPSSRKSSCVGFLLIFRENLHFYPPIKTHRFLLLSHSHNQRTQIPALYLPQALIPLMSLQLIIAQPISLVSRASPVSGSATQHYGMRDDLIMFGSEGSSSSSDANSSQVSQSREIKQDDIMGIQNYMSNGYNGQSNKFLLSNGSNNKQWTEKPNGCFGENLLDNYDINDIKQLISSSSSGSDDGYSGYDFGIDEYMTREKCMYYW 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1028 260 ProSiteProfiles Myb-like domain profile. 9 53 IPR001005 -
Dere08g1028 260 Pfam Myb-like DNA-binding domain 14 53 IPR001005 -
Dere08g1028 260 SUPERFAMILY Homeodomain-like 11 54 IPR009057 -
Dere08g1028 260 CDD SANT 16 44 IPR001005 -
Dere08g1028 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 35 IPR017930 -
Dere08g1028 260 Gene3D - 7 63 - -
Dere08g1028 260 PANTHER OS09G0431300 PROTEIN 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1028 Dere-ChrDere08 14261969 14263403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1028 1 46 MYB Transcription Factor Family AT2G36890 86.957 8.21e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere08g1028 Myb_DNA-binding 9.3e-06 CL0123