Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1020 ATGGATGAATGGATGAGATCATGGTATGCTCTTAGTCCTCATCAATCTCTGCCTACTGCTGGTTGCGACGTGAATGATGGAAAATGCATCCACGTACTCTTTCCAGCTAGAACAACTTTACTCTCTGTAAAAAGCGAAACATACTATTGTATAAATGTTGGTGTGTTTCTGATATATGCTGCATCTTCTGACTGGGAAACAGGACTAATCAACAGCATATGGATAATTATCTACCTTCATACAGAGCAGAGACACATGTGTATCCATGATTTAAATGCATACTCACCTATCATCATCAAACAGTATGGTGATACTGATTTGTGCCTCTGCATAGCCCAGGTGAGAGGCATAAAATCCTGGGGTATATTTGTTCTAGTGTACACAGACACTCGCAGGGCGAGTATCAATCCTGTTCAGGATAAACCAAACCAGAAGGGACCAGTATCAGTTTGACTTTTCTTCCTTTGCAGTGGTGTTTTCGCTCGCTGTTCTGAAAGACTAGAGAACCAGCTCTGGCCTACCCCACTCTACGATTTCATGCTCTCGTTCCGTTCGTGCTTCTCCTCGCCATTCTTTCGCCCCATCGTGTCTCTCCTTCGTCTCAAGTTTTCTCTCTCACCCTCTAAACCCTCCACGTTCAAGCCCATCTTCTTGCCAACCCATAATCGCTGTCGGAACATGTCCTCGCGCCCGTCTGCTTTCGATGCTCTCATGTCTGGAGCTCGTGCCGCCGCCAAGAAGAAGCCCCAATCTTCTTCTCCCCGGAAACGTAAAACCGTGGATTCCAATTCAACCCAAAACCCTGAAAACCTCAAAAGCTCGGAAAGAACTTGCCAGTCTTCGGAACCCAATGGCGATACTAAGTGTTCTGACGCTATAGCTTCCGATAAGGTACAAGAGCCGGCCAAAGAACACTTGGGCAATGGGGGCCTGACGGGGTCGGAGGATGTTCTTGCCGCGAAGAGAATGCGAGTTGTAAGTTCCCAGGAGAAGATTACAGAATTGAAGAAAAAAGTTTCTCTATTGAAAAAGAAGCCTGGAGATTTTGACCCTAGTTCGATATGTTGTTGGGAAAAGGGTGAACCCGTACCCTTTCTGTTTCTTGGTTTGACATTTGATATGATTGCGGAAGAGACAGGACGGATTGCGATTACAGATATAGTGTGCAATATGCTGAGGACTGTCATGCACACTACACCCGATGATCTGGTGGCTGTTGTTTATCTTTCCGCAAATAAAATTGCTCCGGCGCATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATTATTAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGGTGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATCTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCACTAACAATTAGAAAGGTTTTCAGCACTTTTCGTCTTATTGCCAAGGAATCAGGTAAAGACAGCCAGGAGAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGATTGTGAACCTCAATATCTAATTCGTCTACTTCAGTCAAAGTTGCGGATTGGGTTAGCTGAGCAAACCCTCTTAGCTGCATTGGGCCAAGCTGCAGTATACACTGAAGGACATTCTGTACCACCACCTGAAATTCAGTCTCCTTTAGAAGAGGCGGCGAAGATTGTCAAACAAGTATATTCTGTTCTTCCTGTCTATGACAAAATAATTCCTGCACTGCTTACTGGTGGTGTATGGAAACTTCCAAAGACATGTAAATTTACTCTTGGGGTTCCAGTTGGACCTATGTTGTCTAAAGCAACCAAGGGTGTATCTGAAGTTCTGAATAAATTCCAGGATGTAGTGTTTACTTGTGAATACAAATATGACGGGGAGCGTGCCCAGATACATTACATGGAGAACAGCTCAGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTGTTTCAAGGTTAAAGAAATCACATGTTTCATCATTTGTTCTCGATTGTGAACTTGTTGCATATGACCGTGAAAAACAGAAAATCCTTCCTTTCCAGGTGCTCAGTACGCGAGCTCGCAAAAATGTGGCTATGAGTGATATAAAGGTTGACGTATGCATATTTGCTTTTGATATCTTGTATCTTAATGGCAAGCCACTGCTTCAGGAAACCCTGAAAATCCGCAGAGAGCATCTCTACTCCTCTTTTGATGAACAACCTGGTCTTTTTCAGTTTGCAACAGCAATAACATCAAATGATGTTGAGGAAGTACAGAAATTTCTTGACACAGCTGTTGATGCTAGTTGCGAAGGTTTAATTATCAAAACTTTAGATGAAGATGCTACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTGGAGAATATAGGGGACTCACTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGCGGGAAACGTACAGGGGTCTATGGTGCTTTTCTCCTTGCTTGCTATGACTGCAATAATGAAGAATTTCAAAGCATTTGTAAAATTGGCACGGGATTCTCGGAGGCAATGCTTGAAGAACGTTCTGCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGCCATATTATCGATATGCAGAGACAATCAATCCTGATGTCTGGTTTGAAGCCTCCCAGGTATGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCACCGTGCTGCAGTGGGCATAGTTGATTCAGATAAGGGCATATCTCTTCGGTTTCCACGTCTAGTTCGTGTTCGTGATGACAAAGCTCCTGAGCAAGCCTCATCATCTGAGATGGTTGCTGAAATGTATACTGCTCAAAAACACAATCACCCGAACAATCAGGAAGATGAAGAGGATTGA 2934 0.438 MDEWMRSWYALSPHQSLPTAGCDVNDGKCIHVLFPARTTLLSVKSETYYCINVGVFLIYAASSDWETGLINSIWIIIYLHTEQRHMCIHDLNAYSPIIIKQYGDTDLCLCIAQVRGIKSWGIFVLVYTDTRRASINPVQDKPNQKGPVSVXLFFLCSGVFARCSERLENQLWPTPLYDFMLSFRSCFSSPFFRPIVSLLRLKFSLSPSKPSTFKPIFLPTHNRCRNMSSRPSAFDALMSGARAAAKKKPQSSSPRKRKTVDSNSTQNPENLKSSERTCQSSEPNGDTKCSDAIASDKVQEPAKEHLGNGGLTGSEDVLAAKRMRVVSSQEKITELKKKVSLLKKKPGDFDPSSICCWEKGEPVPFLFLGLTFDMIAEETGRIAITDIVCNMLRTVMHTTPDDLVAVVYLSANKIAPAHEGLELGIGDASIIKALAEACGRTEVQIKNQYKEKGDLGLVAKASRSSQSMMRKPDPLTIRKVFSTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYTEGHSVPPPEIQSPLEEAAKIVKQVYSVLPVYDKIIPALLTGGVWKLPKTCKFTLGVPVGPMLSKATKGVSEVLNKFQDVVFTCEYKYDGERAQIHYMENSSVEIYSRNAERNTGKFPDVVAAVSRLKKSHVSSFVLDCELVAYDREKQKILPFQVLSTRARKNVAMSDIKVDVCIFAFDILYLNGKPLLQETLKIRREHLYSSFDEQPGLFQFATAITSNDVEEVQKFLDTAVDASCEGLIIKTLDEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDCNNEEFQSICKIGTGFSEAMLEERSASLRSKVIPKPKPYYRYAETINPDVWFEASQVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQASSSEMVAEMYTAQKHNHPNNQEDEED 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1020 977 Gene3D DNA ligase/mRNA capping enzyme 635 760 - -
Dere08g1020 977 Pfam ATP dependent DNA ligase domain 606 810 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dere08g1020 977 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 347 597 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dere08g1020 977 MobiDBLite consensus disorder prediction 256 288 - -
Dere08g1020 977 Pfam ATP dependent DNA ligase C terminal region 835 946 IPR012309 GO:0003910|GO:0006281|GO:0006310
Dere08g1020 977 Gene3D - 616 815 - -
Dere08g1020 977 CDD Adenylation_DNA_ligase_I_Euk 595 813 - -
Dere08g1020 977 FunFam DNA ligase 341 608 - -
Dere08g1020 977 FunFam DNA ligase 606 812 - -
Dere08g1020 977 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 246 974 - -
Dere08g1020 977 NCBIfam ATP-dependent DNA ligase 422 961 IPR000977 GO:0003910|GO:0005524|GO:0071897
Dere08g1020 977 SUPERFAMILY Nucleic acid-binding proteins 818 964 IPR012340 -
Dere08g1020 977 Pfam DNA ligase N terminus 367 539 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dere08g1020 977 FunFam DNA ligase 815 974 - -
Dere08g1020 977 ProSitePatterns ATP-dependent DNA ligase signature 2. 784 810 IPR016059 GO:0003909
Dere08g1020 977 Gene3D - 819 965 IPR012340 -
Dere08g1020 977 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 598 816 - -
Dere08g1020 977 Gene3D - 342 608 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dere08g1020 977 Coils Coil 325 345 - -
Dere08g1020 977 MobiDBLite consensus disorder prediction 945 977 - -
Dere08g1020 977 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 630 638 IPR016059 GO:0003909
Dere08g1020 977 ProSiteProfiles ATP-dependent DNA ligase family profile. 712 848 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dere08g1020 977 MobiDBLite consensus disorder prediction 229 313 - -
Dere08g1020 977 CDD OBF_DNA_ligase_I 818 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1020 Dere-ChrDere08 14153121 14172211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1020 228 977 Core DNA Replication Machinery Family AT1G08130 69.150 0.0 1079