Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1018 ATGCACAAGATGGATGCTTTCCAAAACAAAGTGATGCACATTAATGACTTTGAGCTTCAAGACTTGATCGACGACACCAATTTCGATCAGTTTATCAATTTTCTTCGTGGGGAGAATGACGACTCAGTCTGTAACTTCGATGCAGACCTTATCAATGGTTGCTTAGCTGATAACCAGTTTCTTCCATTCCCTGCAAACCCATATGAGTCTAATGGTGCTGTAAATGCCTATGATCCAAGCTCTACGCTTAGCTCCTTCTCATGTTTTGATGGAGAAGTGAAGGGAGGAGGAGGAGGAGAAGAAGAGAATGACTCTTCTGCAACAACAATCACCACCACTGACACTACTGCGAATGGTAATGCCAAACAGAGGCCTAAAATTGATCGGTCTAAGACTCTTATTTCTGAGAGAAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCCATCGTGGGCGATGCTGTATCATATGTGCAGGAACTGCAAGAGCAAGCTAAGAGGCTGAAGGCTGAGGTTGCAGGCCTTGAAGCATCCTTGCTAGCGTCAGAACATGATCAAGGATCAGTTGAAAACCCCATGAATGTTCAAGACGATCACATCAACTATCCAATCTGCATGAAGATCATTCAGATGGACATGTTTCAAGTGGAAGAAAGAGGGTTTTATGCGAAATTGGTGTGCAATAAAGGAGAAGGGGTGGCTACCTCACTGTACAGGGTTCTTGAGTCTCTAGCAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGATTTCTACTAACATTTACATTGAATGTGAAAGGTTATGAGCCAGAAATGAACCTGCCAAATTTGAAGCTGTGGGTGACAGGCGCTCTTCTGAACCAAGGCTTCGAATTTATTACGACTTTTCATGATTGA 954 0.435 MHKMDAFQNKVMHINDFELQDLIDDTNFDQFINFLRGENDDSVCNFDADLINGCLADNQFLPFPANPYESNGAVNAYDPSSTLSSFSCFDGEVKGGGGGEEENDSSATTITTTDTTANGNAKQRPKIDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVSYVQELQEQAKRLKAEVAGLEASLLASEHDQGSVENPMNVQDDHINYPICMKIIQMDMFQVEERGFYAKLVCNKGEGVATSLYRVLESLAGFNVQNSNLATVSDRFLLTFTLNVKGYEPEMNLPNLKLWVTGALLNQGFEFITTFHD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1018 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 53 307 - -
Dere08g1018 317 Gene3D - 118 193 IPR036638 GO:0046983
Dere08g1018 317 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 123 193 - -
Dere08g1018 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Dere08g1018 317 CDD bHLH_AtFIT_like 128 201 - -
Dere08g1018 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 192 IPR036638 GO:0046983
Dere08g1018 317 MobiDBLite consensus disorder prediction 94 126 - -
Dere08g1018 317 SMART finulus 133 182 IPR011598 GO:0046983
Dere08g1018 317 MobiDBLite consensus disorder prediction 102 123 - -
Dere08g1018 317 Pfam Helix-loop-helix DNA-binding domain 134 177 IPR011598 GO:0046983
Dere08g1018 317 Coils Coil 166 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1018 Dere-ChrDere08 14136575 14138393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1018 4 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.188 3.47e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g1018 HLH 1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1018 08 14136575 14138393 Dere08g1018 08 14136575 14138393 ECH