Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1014 ATGGAAGGCATGGAGGAAGTGGAGTTTATGGGGTCGTCGTCTAATACCGATGCCACTGTGAGTGTGACGACGACGCACGTCGCCAAGGGCAAGCGAACCAAGAGGCAGAGGCCGTTCTCGCCTTGTGCTGTTGTTGCAGCCATGGCTTGTAGCTCCTCAAGTGTCTCCGGGGAACACGTCAGCGGCGGCGCCGGGGGCGACTGTGGGTCGATTTCGTCTACCACCACCACCACTAATAATTACGAGAGCACTGAGGAAGAGGAAGACATGGCTAACTGCTTGATTCTCTTGGCTCAGGGACGGGGTTCTCATCATCATAACACTAAGCTCCAACCTCAATCTCAATCTGAAGCTGCTAGGTCGACTGAAAGAGGCGGCAGCCGGAGATTCACCGAGATGCCCACCGCCACCTCCGCCGCCTCCGCCGCCAAAATTGGTTTCTATGTTTACGAGTGCAAGACGTGTAACCGAACCTTCCCTTCGTTTCAAGCGTTGGGTGGGCACAGGGCCAGCCACAAAAAGCCTAAGCTCGCGCCAGAGGAGAAAAAACCACCGCCACCGCCTACGCAACCGCCGATATCATCACAGCTTATCAACAATTACGAGATTGAAGAGGCTCAAATAAAAAGTAGCCCTCAAATTTCTCTTCAATTGGGCAGCAATATTGGAGTCGTCCAAAGCAACAAGGCGAAGATTCACGAGTGTTCGATATGCGGGTCAGAATTCACGTCCGGGCAAGCATTGGGCGGGCACATGAGAAGGCACAGGGCATCCACAACCACCACTCATCCGGCGGTGGGAATCGAAACAGGCTGTAACGTGCCCAACGACGTGACCACCGGCAAGGTGCAAGCGGAGCCGAGGAATATTCTAGCGTTGGATCTAAACCTTCCGGCGCCGGAAGAGGATCTCCGGGATTCCAAGTTTCAGTTCGCGCCAAAACAGAAGCCATTGGTGCTGTCTGCTCCGTCTTTGGTGGACTGCCATTATTAG 993 0.5438 MEGMEEVEFMGSSSNTDATVSVTTTHVAKGKRTKRQRPFSPCAVVAAMACSSSSVSGEHVSGGAGGDCGSISSTTTTTNNYESTEEEEDMANCLILLAQGRGSHHHNTKLQPQSQSEAARSTERGGSRRFTEMPTATSAASAAKIGFYVYECKTCNRTFPSFQALGGHRASHKKPKLAPEEKKPPPPPTQPPISSQLINNYEIEEAQIKSSPQISLQLGSNIGVVQSNKAKIHECSICGSEFTSGQALGGHMRRHRASTTTTHPAVGIETGCNVPNDVTTGKVQAEPRNILALDLNLPAPEEDLRDSKFQFAPKQKPLVLSAPSLVDCHY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1014 330 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Dere08g1014 330 PANTHER ZINC FINGER PROTEIN ZAT5 37 317 - -
Dere08g1014 330 MobiDBLite consensus disorder prediction 102 136 - -
Dere08g1014 330 Gene3D Classic Zinc Finger 148 255 - -
Dere08g1014 330 MobiDBLite consensus disorder prediction 104 121 - -
Dere08g1014 330 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Dere08g1014 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Dere08g1014 330 MobiDBLite consensus disorder prediction 166 195 - -
Dere08g1014 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Dere08g1014 330 SMART c2h2final6 150 172 IPR013087 -
Dere08g1014 330 SMART c2h2final6 233 255 IPR013087 -
Dere08g1014 330 SUPERFAMILY beta-beta-alpha zinc fingers 149 255 IPR036236 -
Dere08g1014 330 Pfam C2H2-type zinc finger 233 257 - -
Dere08g1014 330 Pfam C2H2-type zinc finger 149 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1014 Dere-ChrDere08 14091290 14092282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1014 25 330 C2H2 Transcription Factor Family AT2G28200 44.582 6.15e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g1014 zf-C2H2_6 2.3e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1014 08 14091290 14092282 Dere07g0740 07 10804503 10805285 CCT
Dere08g1014 08 14091290 14092282 Dere08g1014 08 14091290 14092282 ECH
Dere08g1014 08 14091290 14092282 Dere07g0740 07 10804503 10805285 ECH